Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq54 179 6e-40 seq37 156 7e-33 >seq54 Length=1261221 Score = 179 bits (198), Expect = 6e-40 Identities = 313/453 (69%), Gaps = 2/453 (0%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| ||||||||| ||| || ||||| || |||||||||| ||||||||| | | Sbjct 1145447 AGGAGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAG 1145506 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | || || ||||||| |||||| |||||||| || |||| ||||| ||||| || Sbjct 1145507 GTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTG 1145566 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || ||||| ||||| ||||| || || || ||||| | || | |||| || | || || Sbjct 1145567 AAGAAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTG 1145626 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 || ||| |||| || | ||||| || |||||||| |||||| || ||| ||| | | Sbjct 1145627 TCCTGGATCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATG 1145686 Query 160157 GCGTTAAACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 ||||| || | || || | ||| |||||||| || |||| ||| || Sbjct 1145687 GCGTTGAAGAGATAGGTTC-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGA 1145745 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 ||| | || | ||| | || || || ||||| ||| |||||| || ||||| Sbjct 1145746 GTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTC 1145805 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | ||| ||||| |||| | | | | ||||| | || || | ||||| | Sbjct 1145806 GGGGATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGA 1145865 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAA 160368 ||| || ||||| || | | |||||||||||| Sbjct 1145866 GGCGGCGAAGAAGGCAAGGATGTGAGAGATGAA 1145898 >seq37 Length=4018383 Score = 156 bits (172), Expect = 7e-33 Identities = 456/681 (67%), Gaps = 20/681 (3%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGC-TTCTCAGATAGTACATGCCGG 203900 || || ||||||||||||| | || |||||| ||||| ||| ||| ||||||||||| | Sbjct 715853 TCGACAGTGAACTGAATGG-GAGCAGCGGCAG-CCTGCGTTCGCAGGTAGTACATGCCCG 715796 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || || || ||| ||| | ||||||| | | |||| || | |||||| Sbjct 715795 TCTTCAGACCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGT 715736 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| ||||| ||||||||| || || ||| ||||| || || || || ||| Sbjct 715735 CCTTCATGTGGATGTTGAGAGACTGGGACTGATCAATG-AAGGCACCTCGGTCGGCTGCC 715677 Query 204020 ATATTGATAA--TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 || | || | ||| ||| |||||||||||||| |||||| | | | || || Sbjct 715676 ATCTGGACGACCTGG--CGCTGGGAAATCTCCCACACGGTCTTGTAGA-GAGCCT--TGA 715622 Query 204078 GTTGAG-GCACATCTT-CCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || | || || | || || ||| || ||||| || || || | || || Sbjct 715621 CCTCAGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCAGCAATGATTCGGTTCT 715562 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | ||| ||||| ||||| || || ||| | || |||||| | || Sbjct 715561 TCATGGAATCCGACCACAGGCCCATATCGACGAGATCCTTGAGCAACCAGGGGTTAACGA 715502 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | || || | || | | | |||| |||| | || ||||| Sbjct 715501 CCTGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGC 715442 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||||| || | ||||| | |||||||| ||||||||||| || || ||||| Sbjct 715441 ACTCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGAC 715382 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 |||||| ||| | | | || ||||| | | ||||| |||||| | || Sbjct 715381 TGTTGCGGGTACCATGCTCCTTGA-CCTGCTCCCTGAGAGACTCCCAGTCCCAGAGATCA 715323 Query 204374 CTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 ||| |||||| ||||||||||||||| | || || | | | | || ||||||| Sbjct 715322 GAGGGCTTCACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTG 715263 Query 204434 TACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGCGTGATA 204492 | || | ||||| ||||| | |||||| ||||| || || | || || || Sbjct 715262 AAGGTAGAGTAAGGACCCTCCTCCTTGGCCAGC-TGCACGGAAGCAGTCAGAGCAGCATG 715204 Query 204493 GTACATGGTCTCAAAGATCTG 204513 ||| ||||||||||||||||| Sbjct 715203 GTAGATGGTCTCAAAGATCTG 715183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154176237680