Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq32 131 4e-25 seq41 111 4e-19 >seq32 Length=3227256 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||| | ||| | || || Sbjct 1807644 AGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 1807703 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| || ||||| ||||| ||| ||||||||| ||| Sbjct 1807704 TCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC 1807763 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA-CGTGATCG- 199595 |||||||| ||||||| |||| ||||| | | ||| || || || ||||| | Sbjct 1807764 TGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGT 1807823 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || |||||||| || || || ||||| Sbjct 1807824 TCTTTCCAGTGAGAGTCTTGACGAAGATTTG 1807854 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||| ||||| || | ||||||||||| | || | || || Sbjct 1807417 AGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCC 1807476 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || | ||| || | ||| Sbjct 1807477 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGATACCCTCCTTG-TCC 1807535 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | ||| || | | || || |||| ||||| ||| Sbjct 1807536 TGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTC 1807595 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || || Sbjct 1807596 TTTCCTGTGAGAGTCTTGACAAAGATCTG 1807624 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || |||||||| |||| |||||| || | | || | ||||| Sbjct 1808084 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCC 1808143 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || || |||||||| || ||| || || || ||| Sbjct 1808144 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 1808203 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 1808204 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTC 1808263 Query 199598 TTACCCGT 199605 || ||||| Sbjct 1808264 TTGCCCGT 1808271 >seq41 Length=1307349 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||| |||| ||||||||| || || | ||||| Sbjct 954342 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 954401 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||||||||| || ||| || || ||| Sbjct 954402 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 954461 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 954462 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 954521 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 954522 TTCCCCGTAAGGGTCTTGACGAAGATCTG 954550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920044191901