Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq41 129 7e-25 seq32 113 5e-20 seq4 111 2e-19 >seq41 Length=1307349 Score = 129 bits (142), Expect = 7e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | || |||||||| ||||| ||||||||| || ||||| | || ||| Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||||| || | || |||||||||| | Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 954465 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTT 954523 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||||| || || || || ||||| ||||| |||| Sbjct 954524 CCCCGTAAGGGTCTTGACGAAGATCTGCATCTTGC 954558 >seq32 Length=3227256 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| ||| |||||| ||||| ||||||||| ||||| || |||| ||| Sbjct 1807647 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCG 1807706 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| || | ||||| ||||| | || | | ||||| ||| Sbjct 1807707 AGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGA 1807766 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC-CACCGTGATGGTT-T 46562 |||||| ||| | | | | |||||| ||||||||| || | ||||||||| | Sbjct 1807767 ATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGTTCT 1807826 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || || || ||||||||||| Sbjct 1807827 TTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || || ||||||||||||||||| Sbjct 1808104 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1808163 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 1808164 AATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 1808223 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | || || || || || || | |||||||| |||||||||| Sbjct 1808224 GTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCA 1808273 Score = 102 bits (112), Expect = 9e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || || ||||| |||| || |||||||| || || || Sbjct 1807438 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 1807497 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | |||||||||| ||||| ||| | | Sbjct 1807498 ATAAGTCGCTGCTGGTCGG-GGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTA 1807556 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||||| || || || |||| |||||||| || || || || || || ||| Sbjct 1807557 TCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACA 1807616 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1807617 AAGATCTGCAT 1807627 >seq4 Length=1115785 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| ||||| || | || || ||||||||||| ||||| | Sbjct 972052 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 972111 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 972112 TCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 972171 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 972172 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 972231 Query 46584 A 46584 | Sbjct 972232 A 972232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237672255560