Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq54 264 1e-65 seq32 118 1e-21 seq41 116 4e-21 seq4 111 2e-19 >seq54 Length=1261221 Score = 264 bits (292), Expect = 1e-65 Identities = 567/835 (68%), Gaps = 37/835 (4%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| ||| ||| | ||| || || ||||||||| Sbjct 1145183 TTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1145242 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | |||||| ||| | |||| |||| ||||||| || | |||||| |||||| Sbjct 1145243 GCAGACTTGTAGACCTTCTCGTTGCC---CAGGGCGACGAGGAGACGGTCGGCGACGAAC 1145299 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 |||||||| ||| |||| | || || | | | || || || |||| || || || | Sbjct 1145300 TCGATGTACTGCTTCATGAGGTTGGCGTTCATG-CCGAGGAGGGCGCAGGGG-AGAGCCT 1145357 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || || || ||||| |||| ||| || || |||| ||| ||| | | | | Sbjct 1145358 CAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATGATCTGCT 1145417 Query 132860 CGCT----CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915 ||| ||||| ||| | || | | | ||| ||||||||| || | Sbjct 1145418 TGCTGGCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGA 1145473 Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 ||||| || | || ||||| |||||| ||| |||| ||||||||||| || || || Sbjct 1145474 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTC 1145533 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| || || || ||||||| ||||||||||| ||||| Sbjct 1145534 TTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCGAAG 1145593 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATT 133093 || || || |||| | || | | || ||| |||| ||||| | | ||||| | Sbjct 1145594 GCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTGG--ATCCATCTGATAGCCCAGT 1145651 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 ||||||| | || ||| || || || || |||||||| || | | || ||| || Sbjct 1145652 CGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGAT--AGGTTCGCT- 1145708 Query 133154 CCGAGGAACGCAC------GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 ||| || || | ||||||||| ||||| || || | || ||||| | || Sbjct 1145709 --GAG-AAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1145765 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 ||||||| ||| || |||||||| ||||| || |||||| | ||| || || Sbjct 1145766 TCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGC 1145825 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 ||| ||||| || ||||| ||||||||||||||||| ||||||||| ||||| || | Sbjct 1145826 TGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAGAAGGCAAGGA 1145885 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCT 133384 ||| |||||| |||||| | ||| ||| | ||||||| | |||| Sbjct 1145886 TGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 1145945 Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 1145946 TGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 1146000 >seq32 Length=3227256 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || |||||||| | || |||||| ||| | Sbjct 1807627 ATGCAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGC 1807568 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| || ||| ||||||| Sbjct 1807567 GATACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCC-CCGACCAG 1807509 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1807508 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 1807449 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| |||| ||||| | ||||| ||| | | ||||| Sbjct 1807448 ATTCAGAAGGAATCGACCCTGCACCTTGTGCTCCGTCTCCGTGGCGG 1807402 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAA-AACCATCACCGT-CGACGTCGAGGCCA 38301 |||||||| ||||| || || ||||| || || |||||||||| | ||| || || | Sbjct 1807857 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGAACCATCACCCTTCGAGGTGGAATCGT 1807798 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | |||| | || || || | || || || |||||||| | ||| Sbjct 1807797 CCGACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGAC 1807739 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | ||| ||||| || || || |||| || || |||| ||||||| Sbjct 1807738 CAACAGCGACTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTAC 1807679 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||| || ||| || | || || Sbjct 1807678 AACATCCAGAAGGAGTCTACTCTGCACCTGGTTCTTCGTCTGCGTGGTGG 1807629 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 |||||||| ||||||||| |||| || ||| || | || | | | | | | || Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || || | || || ||||| || |||| ||| ||||| Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | |||||||| ||| ||||||||||| ||||| | || || ||| Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 1808091 CTCGTCCTCCGT 1808080 >seq41 Length=1307349 Score = 116 bits (128), Expect = 4e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || || ||| | Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| |||| Sbjct 954496 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 954438 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || || || ||||| || || | |||||||| | |||||| Sbjct 954437 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 954378 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| || || Sbjct 954377 CAACATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCG 954339 >seq4 Length=1115785 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 972232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 972173 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | || || ||||| || Sbjct 972172 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 972113 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 972112 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 972053 Query 38433 G 38433 | Sbjct 972052 G 972052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172156027520