Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq54 264 1e-65
seq32 118 1e-21
seq41 116 4e-21
seq4 111 2e-19
>seq54
Length=1261221
Score = 264 bits (292), Expect = 1e-65
Identities = 567/835 (68%), Gaps = 37/835 (4%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || ||| ||| ||| | ||| || || |||||||||
Sbjct 1145183 TTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1145242
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
|| | |||||| ||| | |||| |||| ||||||| || | |||||| ||||||
Sbjct 1145243 GCAGACTTGTAGACCTTCTCGTTGCC---CAGGGCGACGAGGAGACGGTCGGCGACGAAC 1145299
Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799
|||||||| ||| |||| | || || | | | || || || |||| || || || |
Sbjct 1145300 TCGATGTACTGCTTCATGAGGTTGGCGTTCATG-CCGAGGAGGGCGCAGGGG-AGAGCCT 1145357
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
| || || || ||||| |||| ||| || || |||| ||| ||| | | | |
Sbjct 1145358 CAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATGATCTGCT 1145417
Query 132860 CGCT----CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915
||| ||||| ||| | || | | | ||| ||||||||| || |
Sbjct 1145418 TGCTGGCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGA 1145473
Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975
||||| || | || ||||| |||||| ||| |||| ||||||||||| || || ||
Sbjct 1145474 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTC 1145533
Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035
|||||||| || |||| || || || ||||||| ||||||||||| |||||
Sbjct 1145534 TTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCGAAG 1145593
Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATT 133093
|| || || |||| | || | | || ||| |||| ||||| | | ||||| |
Sbjct 1145594 GCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTGG--ATCCATCTGATAGCCCAGT 1145651
Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153
||||||| | || ||| || || || || |||||||| || | | || ||| ||
Sbjct 1145652 CGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGAT--AGGTTCGCT- 1145708
Query 133154 CCGAGGAACGCAC------GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207
||| || || | ||||||||| ||||| || || | || ||||| | ||
Sbjct 1145709 --GAG-AAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1145765
Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267
||||||| ||| || |||||||| ||||| || |||||| | ||| || ||
Sbjct 1145766 TCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTCGCCGC 1145825
Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327
||| ||||| || ||||| ||||||||||||||||| ||||||||| ||||| || |
Sbjct 1145826 TGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAGAAGGCAAGGA 1145885
Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCT 133384
||| |||||| |||||| | ||| ||| | ||||||| | ||||
Sbjct 1145886 TGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 1145945
Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || | ||||||| | ||||| || || |||||||| || ||||||||
Sbjct 1145946 TGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 1146000
>seq32
Length=3227256
Score = 118 bits (130), Expect = 1e-21
Identities = 163/227 (72%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| || || |||||||| | || |||||| ||| |
Sbjct 1807627 ATGCAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGC 1807568
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| || ||| |||||||
Sbjct 1807567 GATACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCC-CCGACCAG 1807509
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1807508 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 1807449
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || |||||| |||| ||||| | ||||| ||| | | |||||
Sbjct 1807448 ATTCAGAAGGAATCGACCCTGCACCTTGTGCTCCGTCTCCGTGGCGG 1807402
Score = 113 bits (124), Expect = 5e-20
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAA-AACCATCACCGT-CGACGTCGAGGCCA 38301
|||||||| ||||| || || ||||| || || |||||||||| | ||| || || |
Sbjct 1807857 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGAACCATCACCCTTCGAGGTGGAATCGT 1807798
Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | |||| | || || || | || || || |||||||| | |||
Sbjct 1807797 CCGACACAATCGATAACG-TGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGAC 1807739
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|||||||| || || | ||| ||||| || || || |||| || || |||| |||||||
Sbjct 1807738 CAACAGCGACTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTAC 1807679
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| ||||| | || ||||| |||| || ||| || | || ||
Sbjct 1807678 AACATCCAGAAGGAGTCTACTCTGCACCTGGTTCTTCGTCTGCGTGGTGG 1807629
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|||||||| ||||||||| |||| || ||| || | || | | | | | | ||
Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| || | ||||| ||||| || || | || || ||||| || |||| ||| |||||
Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || || | |||||||| ||| ||||||||||| ||||| | || || |||
Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092
Query 38448 TTGGTGCTGCGT 38459
| || || |||
Sbjct 1808091 CTCGTCCTCCGT 1808080
>seq41
Length=1307349
Score = 116 bits (128), Expect = 4e-21
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || |||||| | || || ||| |
Sbjct 954556 AAGATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 954497
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| |||||| ||||
Sbjct 954496 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 954438
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | || || || ||||| || || | |||||||| | ||||||
Sbjct 954437 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 954378
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || |||| || ||
Sbjct 954377 CAACATCCAGAAGGAGAGC-ACTCTCCACCTGGTCCTCCG 954339
>seq4
Length=1115785
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 972232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 972173
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | || || ||||| ||
Sbjct 972172 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACTG 972113
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | || || ||| ||||||||||||||| |||
Sbjct 972112 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 972053
Query 38433 G 38433
|
Sbjct 972052 G 972052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172156027520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |