Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq28 286 4e-72 >seq28 Length=4887614 Score = 286 bits (316), Expect = 4e-72 Identities = 444/632 (70%), Gaps = 12/632 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 2272496 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCC 2272555 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 2272556 TCCTCAATGGTCAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 2272615 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || | ||||| ||||||||||| || || || || || || || || Sbjct 2272616 TTGCGCTCACCCTCGATCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCG 2272675 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| ||||||||||| | ||||| || || || || || Sbjct 2272676 TTGATGATTCGGAGAACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGACGC 2272735 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| || || || ||||| |||| |||| ||| |||||| Sbjct 2272736 TGAGAGTCGTTGAAGTAGGCAGGAACGGTGACGACAGCGTTGTTGACGGTCTCACCGAGG 2272795 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | ||| ||| |||||||| ||||| || || ||||| || | | Sbjct 2272796 TAAGACTCGGCGGTCTCTCGCATCTTGGTAAGGACCATGGAGGAGATCTCCTCGGGGGTG 2272855 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---G 7873 || ||| || || || || ||||| || || || || || || |||| | Sbjct 2272856 AAGGTCTTCTGCTCGCCCTTGAACTCAACCTCGATGATAGGCTT----GC--CACCCTTG 2272909 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 ||| | ||| | | | | ||||| ||| | ||||||| |||| | ||||| Sbjct 2272910 TCGATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGGTCGGCGAACTTG 2272969 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| | |||||| ||||| || || ||||| | |||||||||||| |||||| Sbjct 2272970 CGACCGATCAAACGCTTGGCATCGAAGACAGTGTTCTGGGGGTTCATGGCAACCTGGTTC 2273029 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || || ||||| ||||| || | || || || ||||| | || || || Sbjct 2273030 TTGGCGGCATCACCGATCAGACGCTC---GGTGTCGGTGAAACCGACGAAAGAGGGAGTG 2273086 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 ||||| || || |||||||| || ||||| || Sbjct 2273087 GTTCGGTTACCCTGGTCGTTGGCGATAATGTC 2273118 Score = 149 bits (164), Expect = 8e-31 Identities = 347/519 (67%), Gaps = 11/519 (2%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| ||||| | ||| || | || ||| | | || Sbjct 1901700 AGGTCCTCGAAACGGGCACGGGTGATGGACATGGTGAAGTCCTCACCATCGAAGAGAGAG 1901759 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 ||||| |||||||| | || || ||||| | || ||||| || ||||| || || Sbjct 1901760 TCAATCTCAATGGTGGCCTGGGCACCGGAAGAGAGGGTACGCTTGGCACGCTCGCAAGCA 1901819 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 ||||| | ||| || || ||||| | | || || | || |||||| || || Sbjct 1901820 GTTCGGAGACGTCGGAGAGCACGGGCATCGCCAGACAGGTCCTTCTTAGTCTTGCGGCCG 1901879 Query 7424 AACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||| | | |||| |||| |||| | | |||||| || | |||||||| || || Sbjct 1901880 AACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTATCGAAGTCCTGACCACCCAGATGGGT 1901938 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || ||||| || ||||| |||| ||| || | ||||| | | || ||||| Sbjct 1901939 GTCACCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACATC 1901998 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATC 7602 || ||||||||||| || || | ||||| ||||| || | ||| | ||| | Sbjct 1901999 GAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTGCC 1902055 Query 7603 G------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | |||||||| ||||| || || || || || || || || ||||| || ||| Sbjct 1902056 GGAGCCAAGACCGTAGGCGATGGCGGCAGCAGTAGGCTCGTTGATGATACGGAGGACGTT 1902115 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || || || | | || || || || || ||||| || ||||| |||||||| Sbjct 1902116 GAGACCGGCGATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAGGC 1902175 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| || | ||| || | | || ||||| || || Sbjct 1902176 AGGGACAGTGATGACGGCCTTCTCAACCTTCTTGCCAAG 1902214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131982266520