Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq37 280 2e-70 seq54 145 9e-30 seq57 91.5 2e-13 >seq37 Length=4018383 Score = 280 bits (310), Expect = 2e-70 Identities = 974/1494 (65%), Gaps = 47/1494 (3%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGACTGGATGGTGTCTTGAT 111604 || ||||| ||||||| || ||| | |||||||| |||| || |||| | | Sbjct 714025 TACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTG-ATGGCAAGATTGT 714083 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 || ||| ||| ||||| ||||||| || || |||| ||| || || | ||||| Sbjct 714084 TGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGTGACAACATTGA 714143 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAAC 111724 ||| | ||||| ||| || ||||| | | |||| ||| || | || || Sbjct 714144 GCGTGTCCTCGAGACTTACAACCTCATGTCGAGCAAGTTCTTCACCCATGCCTCCCCCAC 714203 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| || ||||| || || || | ||| || |||||| | | | || Sbjct 714204 CCTCTTCAATGCGGGTACTCCCCAGCCTCAGCTCTCCTCATGCTTCCTTGTCGACATGAA 714263 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 |||||| || | || ||||| | ||||||| |||||| || || ||| Sbjct 714264 GGAGGACAGTATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATTTCCAAGAT 714323 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA- 111902 |||||||||||| || || || | || || | |||| | ||| || | | Sbjct 714324 GGCTGGTGGTATTGGTCTGAACGTGCACCGAATCCGTGCCACT--GGCTCCTACATCGCC 714381 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| || ||| || | ||| ||| || |||||||| || || ||| ||| || Sbjct 714382 GGTACCAACGGTACCTCCAACGGTGTTACCCCTATGCTTCGTGTCTTCAACAACACTGCC 714441 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC--GCAAG--GGATCTATCGCAGTCTATCTTGAGCC 112018 || || || | || | ||| | | || | || || | || |||| |||||||| Sbjct 714442 CGATACGTCGATCAGGGTGG-CAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGAGCC 714500 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG- 112077 |||||||| ||| || | ||||||||||| |||| ||||| || | || |||| Sbjct 714501 CTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGT 714560 Query 112078 -CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 |||| | ||||| | ||| |||||||||||||| ||||||||||||||| | || Sbjct 714561 CCGCGCT--CGCGACTTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 714618 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 ||| ||| || | ||| |||| | ||||| || || ||||||||| |||| | Sbjct 714619 GAGAAGAACGGTGACTGGACTCTGATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTGC 714678 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG------AAAGTCGGGCG 112250 ||||||||||| || || || ||| ||||| ||| | | | |||| | Sbjct 714679 TACGGTGAGGAGTTCGAGGCTCTGTACGAGAAGTATGAGAAGGCCGGCAAGGGTCGCAAG 714738 Query 112251 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 || || || |||| || | ||| | || || ||| || |||| ||||||||| Sbjct 714739 ACCATGAAGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCTCAGACCGAGACT 714792 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 112370 |||| || | ||||| ||||| || ||| |||| ||||| || || ||||| || Sbjct 714793 GGTAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTG 714852 Query 112371 GGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 ||| || || |||||||| || || || ||| | || | | | |||||| Sbjct 714853 GGTACCATTCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAG 714912 Query 112431 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC--CAGAGACAA 112488 ||||| |||||||| || || |||| || ||| | | | ||| | ||| | Sbjct 714913 GTTGCTGTCTGTAACCTTGCCTCTCTCGCCCTTCCC---TCT-TTCATCAACTATGACGA 714968 Query 112489 AGAC--ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAA 112546 | | | ||| | | || || ||||| || || | |||||| ||||| || Sbjct 714969 GGCCTGCTATGACTTCCAGAAGCTGCACGAGGTCACACAGACTGTCGTTCGCAACCTGAA 715028 Query 112547 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 112606 ||| | |||||| || ||||||||| ||||| || || ||| |||| Sbjct 715029 CAGGATCATTGATGTGAACCACTACCCCGTTCCTGAAGCTCGCAACAGCAACATGCGACA 715088 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACG 112665 ||| || ||||| |||||||||| ||||| || |||| ||| || || || || || | Sbjct 715089 CCGACCTATTGGCGTCGGTGTCCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-CG-CATG 715146 Query 112666 CATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | ||| || || || || || | || || || |||||||| || || || Sbjct 715147 CCTTTCGAGTCTCCTGAGGCTCGAGAGCTGAACAAGCAGATCTTTGAGACCATCTACCAT 715206 Query 112725 GCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 || ||||| | | ||| | || |||| ||| || ||||| || ||||| Sbjct 715207 GCTGCTCT---GACTGCTTCCGTGCAGCTGGCCAAGGAGGAGGGTCCTTACTCTACCTTC 715263 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG-AGACCAA 112840 |||| ||||| || || | || | || || || || |||| |||| ||| || || Sbjct 715264 AAGGGCTCTCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAACGTGAAGCCCTC 715322 Query 112841 GCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 112900 || || |||||||| |||||| ||| | |||||||| | ||| || ||||| Sbjct 715323 TGATCTCTGGGACTGGGAGTCTCTCAGGGAGCAGGTCAAGGAGCATGGTACCCGCAACAG 715382 Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 ||| || | || || ||||| || ||| ||| | || ||| ||||||| || || || Sbjct 715383 TCTGCTGCTTGCCCCCATGCCCACTGCCAGCACTTCGCAGATCCTGGGTAACAACGAGTG 715442 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014 ||| || || ||||| | |||||||| | | | | |||||| || ||||| Sbjct 715443 CTTCGAGCCTTACACCTCCAACATCTACCAGCGTCGTGTCCTCGCTGGCGAGTT 715496 >seq54 Length=1261221 Score = 145 bits (160), Expect = 9e-30 Identities = 209/287 (73%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| || || ||||| | || || ||| | | ||||| | ||||| | Sbjct 1145739 CTCATTGACACCTACATCAAGGAGCCTTCTCAGC-GAACCTATCTCTTCAACGCCATTGA 1145681 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || | || || || | ||||| || || |||||||| | ||| | | |||| | Sbjct 1145680 GACCATCCCTTGCATCCGCAAGAAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGA 1145621 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | |||||||||| |||| ||| | || || || || ||||||||||||||| || Sbjct 1145620 CTC-TTCCTTTGCTCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTG 1145562 Query 102226 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || |||| ||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 1145561 GTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTC 1145503 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 1145502 TCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACCGACTTTGC 1145456 >seq57 Length=2357170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || |||||||||||||||| |||||| || || | ||| | | | || || Sbjct 875208 GGCGTCGATCTCATCAATGAAGATGATGCAAGGAGCGTTCTTGCGGCCTTCGGCGAACAG 875149 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 ||| || ||||| | || ||||| ||||||||||| || || | | || || Sbjct 875148 ATCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAATTCAGAACCGCTCAC 875089 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || | ||||||||| ||| || || || |||| |||||| || |||||||||| Sbjct 875088 ACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGTCTTACCCG 875030 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 16299 |||| || || || || | || ||||| || |||||||| || |||| | || | Sbjct 875029 TACCAGGGGGGCCAGCCAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTTCTCGAACT 874970 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333 |||| || ||||| ||||| | ||||| ||| Sbjct 874969 ---TCTCGGGCTGCTTCAAGAAGCT-CACAAACTC 874939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741600794160