Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq37 239 5e-58 seq57 136 5e-27 seq54 109 6e-19 seq29 98.7 1e-15 >seq37 Length=4018383 Score = 239 bits (264), Expect = 5e-58 Identities = 1024/1597 (64%), Gaps = 61/1597 (4%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 ||||| |||||||| ||||| ||| || || || ||||| | || || ||| Sbjct 715715 GACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGACCTGGCGCTGG 715656 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||| ||||| || |||||||| | | ||||| ||| |||| |||| |||||| Sbjct 715655 GAAATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGATGTTGGGGATGTTC 715596 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCG 109683 || || || ||| || | |||| | | |||||| | |||||| || || Sbjct 715595 TGGATGGA---ACCGTTCTCAGCAATGATTCGGTTCTTCATGGAATCCGACCACAGGCCC 715539 Query 109684 ACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 | | |||||| | |||| || | || || || || || ||||| || Sbjct 715538 ATATCGACGAGATCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAG 715483 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || |||||||||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 715482 GACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGAT 715423 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | |||| || ||||||||||| || | || |||||||| ||| ||| | | Sbjct 715422 CTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACCATGCTC 715363 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919 ||| ||| |||| | | | ||||| || | || || || ||| || Sbjct 715362 CTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGATCAGAGGGCTT-----CACGTTC 715308 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 | |||| || || || | |||||||| |||||||| |||||||| | ||| | Sbjct 715307 C-ACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAAGGTAGAGTAAGG 715249 Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 ||||| ||| ||||| || |||| | || | || || ||||| || || ||||| Sbjct 715248 ACCCTCCTCCTTGGCCAGCTGCACGGAAGCAGTC---AGAGCAGCATGGTAGATGGTCTC 715192 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AA 110095 ||| || || |||| |||| ||| | | ||||| || | | || || || Sbjct 715191 AAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCATGCG-CAGAGCAA 715133 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || |||| || |||||||| ||||||| ||||| || || || |||||| | Sbjct 715132 GGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCATGTTGCTGT 715073 Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 ||||| ||| |||||||| ||| || |||| || || || || Sbjct 715072 TGCGAGC---TTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCAGGTTGCGAA 715016 Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC--GTTTTCGTC-TCCTTAT 110269 ||||||| |||| || || || || | | | || | | ||||| | || Sbjct 715015 CGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATAGCAGGCCTCGTCATAGTTGA 714956 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 ||| | | ||| || || | ||| ||||| || || |||| | ||| || | | Sbjct 714955 TGAAAGA---GGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCAC 714899 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||| || | || || || |||| |||||| || |||| ||||| ||||||||| | Sbjct 714898 AGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGT 714839 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | ||| |||||| |||||| ||||||||| | ||| ||||||| || ||||| | Sbjct 714838 TGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAG 714779 Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTT 110506 || ||| ||||| | ||| | | || | ||| | || |||| | | || Sbjct 714778 CCTCGAGGATGGCATACCAGAGCTTCTG-GGCCTTCATGGTCTTGCG--ACCCTTGCCGG 714722 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 ||| ||| ||||| ||||| |||| || |||| ||||| || | ||||| Sbjct 714721 CCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGG 714662 Query 110567 TCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || || |||||| | || | ||| | || || ||| || | ||||||||| | Sbjct 714661 GACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGA 714602 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 | || |||||||| | ||| ||| | ||| || || ||||||| | || |||| Sbjct 714601 GATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGT 714542 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | ||| || || | || || | || ||| | |||||| || || || |||| || | Sbjct 714541 TCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAA 714482 Query 110747 TGGATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | || | | || || |||| | || || || || ||| ||||||| Sbjct 714481 AAGCACC---AGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGA 714425 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860 | | |||||||| ||| || | ||| ||| || ||||| || ||| | Sbjct 714424 CACGAAGCATAGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAG 714365 Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920 ||||||| || ||| | | || |||||||||||| ||| ||| ||| |||| Sbjct 714364 TGGCACGGATTCGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAAATCATGGCAC 714305 Query 110921 AC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 | ||| |||| ||| |||||||||| ||||| || |||| || | | || ||| Sbjct 714304 AGGTCT-TGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAG 714246 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039 || || || | |||||| | || || |||||||||||||| || || | ||||| || Sbjct 714245 CATGAGGAGAGCTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTG 714186 Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 | ||| |||| ||||| |||||| || ||||| Sbjct 714185 A--AGAACTTGCTCGACATGAGGTTGTAAGTCTCGAG 714151 >seq57 Length=2357170 Score = 136 bits (150), Expect = 5e-27 Identities = 315/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | | || | || || ||||| | ||||| ||| | Sbjct 875393 CGATCGAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCAGCTCGGTTAGTACCA 875334 Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| |||| || | |||| ||| |||||||||||| || || || | ||||| Sbjct 875333 GCCAGGACGACAA--CCTGCTCTCGGGTGTTGAAACCGTCCATCTCGGTAAGGATCTGGT 875276 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATAC-----CACCTGCCGAACGCTTCT 11674 | | ||| || |||||||||||| | | || | ||| || || | Sbjct 875275 TCAGAGTCGCCTCTCGCTCATCGTTGCCACCGAATCCTCGGCCACTCTCCTGTCGTGCCC 875216 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 ||| | ||||| |||||||| ||||| | ||| || || ||| || | | Sbjct 875215 GACCAATGGCGTCGATCTCATCAATGAAGATGATGCAAGGAGCGTTCTTGCGGCCTTCGG 875156 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--C 11792 |||| || || || ||||| | |||||||| || |||||||| ||||| | | | Sbjct 875155 CGAACAGATCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAATTCAGAAC 875096 Query 11793 GGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || | ||||||| |||||| || |||||| ||||| |||| ||||| || || Sbjct 875095 CGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGT 875038 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTT 11910 ||||||||||||||| | ||||| |||| || || ||||||||||||||||| ||| Sbjct 875037 CTTACCCGTACCAGGGGGGCCAGCCAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTT 874978 Query 11911 C-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | | || | ||| |||| ||| | |||| ||||| |||| Sbjct 874977 CTCGAACT---TCTCGGGCTGCTTCAAGAAGCTCACAAACTCC 874938 >seq54 Length=1261221 Score = 109 bits (120), Expect = 6e-19 Identities = 209/302 (69%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 1145455 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1145514 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| | ||| ||| |||||||| Sbjct 1145515 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGAT 1145574 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || ||||| || | ||||||| ||| ||||| ||| |||||| || Sbjct 1145575 ACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGC-AAAGGAAGAGTCCTTGTCCTGGA 1145633 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| ||| |||||||| |||||| ||||| |||| || | ||||| | || Sbjct 1145634 TCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGA 1145693 Query 119731 AAAG-TTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTC 119789 | || | | ||| | || | ||||| || || | |||||||| ||||||||| Sbjct 1145694 AGAGATAGGTTC-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTC 1145752 Query 119790 TC 119791 || Sbjct 1145753 TC 1145754 >seq29 Length=1390531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||||| ||||| ||||| || || ||||| | || | | Sbjct 1041917 GAAGAGCTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCGTCAAACTCACTACC 1041858 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | || |||||||||| | |||||||| | |||||||| || || ||||| Sbjct 1041857 AGACATGTAAAAGAAGGGAACACCGGCTTCACCAGCAACAGCTCGAGCAAGAAGCGTCTT 1041798 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 || ||||| || | ||| | || || | || ||| | |||||||||| | Sbjct 1041797 TCCGGTACCGGGAGGGCCAACTAGGAGAACACCCTTGGGCAACTTGGCACCAAGGTCGCT 1041738 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | | |||||| ||||| ||||| || |||| ||||| ||| ||||||||||| || Sbjct 1041737 GAACTTCTCAGGGTTCTTTAGGAACTCGACAACCTCCTGAAGCTCCTCCTTGGCCTCATC 1041678 Query 11976 GATACCCTCAACATCGGTGAAACGAGT 12002 | || | |||||| |||| || || Sbjct 1041677 GCAGCCGTGGACATCGCTGAATCGGGT 1041651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975241693400