Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq37 239 5e-58
seq57 136 5e-27
seq54 109 6e-19
seq29 98.7 1e-15
>seq37
Length=4018383
Score = 239 bits (264), Expect = 5e-58
Identities = 1024/1597 (64%), Gaps = 61/1597 (4%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
||||| |||||||| ||||| ||| || || || ||||| | || || |||
Sbjct 715715 GACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGACCTGGCGCTGG 715656
Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626
||| ||||| || |||||||| | | ||||| ||| |||| |||| ||||||
Sbjct 715655 GAAATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGATGTTGGGGATGTTC 715596
Query 109627 TGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCG 109683
|| || || ||| || | |||| | | |||||| | |||||| || ||
Sbjct 715595 TGGATGGA---ACCGTTCTCAGCAATGATTCGGTTCTTCATGGAATCCGACCACAGGCCC 715539
Query 109684 ACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739
| | |||||| | |||| || | || || || || || ||||| ||
Sbjct 715538 ATATCGACGAGATCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAG 715483
Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799
|| || |||||||||| | ||||| || ||||| ||||| ||||| || |||||
Sbjct 715482 GACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGAT 715423
Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859
|| | |||| || ||||||||||| || | || |||||||| ||| ||| | |
Sbjct 715422 CTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACCATGCTC 715363
Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919
||| ||| |||| | | | ||||| || | || || || ||| ||
Sbjct 715362 CTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGAGATCAGAGGGCTT-----CACGTTC 715308
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979
| |||| || || || | |||||||| |||||||| |||||||| | ||| |
Sbjct 715307 C-ACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAAGGTAGAGTAAGG 715249
Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
||||| ||| ||||| || |||| | || | || || ||||| || || |||||
Sbjct 715248 ACCCTCCTCCTTGGCCAGCTGCACGGAAGCAGTC---AGAGCAGCATGGTAGATGGTCTC 715192
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AA 110095
||| || || |||| |||| ||| | | ||||| || | | || || ||
Sbjct 715191 AAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCATGCG-CAGAGCAA 715133
Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155
|| |||| || |||||||| ||||||| ||||| || || || |||||| |
Sbjct 715132 GGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCATGTTGCTGT 715073
Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212
||||| ||| |||||||| ||| || |||| || || || ||
Sbjct 715072 TGCGAGC---TTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCAGGTTGCGAA 715016
Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC--GTTTTCGTC-TCCTTAT 110269
||||||| |||| || || || || | | | || | | ||||| | ||
Sbjct 715015 CGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATAGCAGGCCTCGTCATAGTTGA 714956
Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329
||| | | ||| || || | ||| ||||| || || |||| | ||| || | |
Sbjct 714955 TGAAAGA---GGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCAC 714899
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
||| || | || || || |||| |||||| || |||| ||||| ||||||||| |
Sbjct 714898 AGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGT 714839
Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449
| ||| |||||| |||||| ||||||||| | ||| ||||||| || ||||| |
Sbjct 714838 TGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAG 714779
Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTT 110506
|| ||| ||||| | ||| | | || | ||| | || |||| | | ||
Sbjct 714778 CCTCGAGGATGGCATACCAGAGCTTCTG-GGCCTTCATGGTCTTGCG--ACCCTTGCCGG 714722
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
||| ||| ||||| ||||| |||| || |||| ||||| || | |||||
Sbjct 714721 CCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGG 714662
Query 110567 TCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626
|| || |||||| | || | ||| | || || ||| || | ||||||||| |
Sbjct 714661 GACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGA 714602
Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686
| || |||||||| | ||| ||| | ||| || || ||||||| | || ||||
Sbjct 714601 GATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGT 714542
Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746
| ||| || || | || || | || ||| | |||||| || || || |||| || |
Sbjct 714541 TCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAA 714482
Query 110747 TGGATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800
| || | | || || |||| | || || || || ||| |||||||
Sbjct 714481 AAGCACC---AGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGA 714425
Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860
| | |||||||| ||| || | ||| ||| || ||||| || ||| |
Sbjct 714424 CACGAAGCATAGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAG 714365
Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920
||||||| || ||| | | || |||||||||||| ||| ||| ||| ||||
Sbjct 714364 TGGCACGGATTCGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAAATCATGGCAC 714305
Query 110921 AC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979
| ||| |||| ||| |||||||||| ||||| || |||| || | | || |||
Sbjct 714304 AGGTCT-TGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAG 714246
Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039
|| || || | |||||| | || || |||||||||||||| || || | ||||| ||
Sbjct 714245 CATGAGGAGAGCTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTG 714186
Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074
| ||| |||| ||||| |||||| || |||||
Sbjct 714185 A--AGAACTTGCTCGACATGAGGTTGTAAGTCTCGAG 714151
>seq57
Length=2357170
Score = 136 bits (150), Expect = 5e-27
Identities = 315/463 (68%), Gaps = 20/463 (4%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || | | || | || || ||||| | ||||| ||| |
Sbjct 875393 CGATCGAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCAGCTCGGTTAGTACCA 875334
Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|| | ||| |||| || | |||| ||| |||||||||||| || || || | |||||
Sbjct 875333 GCCAGGACGACAA--CCTGCTCTCGGGTGTTGAAACCGTCCATCTCGGTAAGGATCTGGT 875276
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATAC-----CACCTGCCGAACGCTTCT 11674
| | ||| || |||||||||||| | | || | ||| || || |
Sbjct 875275 TCAGAGTCGCCTCTCGCTCATCGTTGCCACCGAATCCTCGGCCACTCTCCTGTCGTGCCC 875216
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
||| | ||||| |||||||| ||||| | ||| || || ||| || | |
Sbjct 875215 GACCAATGGCGTCGATCTCATCAATGAAGATGATGCAAGGAGCGTTCTTGCGGCCTTCGG 875156
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--C 11792
|||| || || || ||||| | |||||||| || |||||||| ||||| | | |
Sbjct 875155 CGAACAGATCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAATTCAGAAC 875096
Query 11793 GGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852
|| | ||||||| |||||| || |||||| ||||| |||| ||||| || ||
Sbjct 875095 CGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGT 875038
Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTT 11910
||||||||||||||| | ||||| |||| || || ||||||||||||||||| |||
Sbjct 875037 CTTACCCGTACCAGGGGGGCCAGCCAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTT 874978
Query 11911 C-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
| | || | ||| |||| ||| | |||| ||||| ||||
Sbjct 874977 CTCGAACT---TCTCGGGCTGCTTCAAGAAGCTCACAAACTCC 874938
>seq54
Length=1261221
Score = 109 bits (120), Expect = 6e-19
Identities = 209/302 (69%), Gaps = 7/302 (2%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| |||||||||||||| || |||| || ||
Sbjct 1145455 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1145514
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| ||||| ||||||| | ||| ||| ||||||||
Sbjct 1145515 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGAT 1145574
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| || ||||| || | ||||||| ||| ||||| ||| |||||| ||
Sbjct 1145575 ACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGC-AAAGGAAGAGTCCTTGTCCTGGA 1145633
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730
||| ||| |||||||| |||||| ||||| |||| || | ||||| | ||
Sbjct 1145634 TCCATCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGA 1145693
Query 119731 AAAG-TTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTC 119789
| || | | ||| | || | ||||| || || | |||||||| |||||||||
Sbjct 1145694 AGAGATAGGTTC-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTC 1145752
Query 119790 TC 119791
||
Sbjct 1145753 TC 1145754
>seq29
Length=1390531
Score = 98.7 bits (108), Expect = 1e-15
Identities = 182/267 (68%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795
||| || || || || ||||| ||||| ||||| || || ||||| | || | |
Sbjct 1041917 GAAGAGCTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCGTCAAACTCACTACC 1041858
Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855
||| | || |||||||||| | |||||||| | |||||||| || || |||||
Sbjct 1041857 AGACATGTAAAAGAAGGGAACACCGGCTTCACCAGCAACAGCTCGAGCAAGAAGCGTCTT 1041798
Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915
|| ||||| || | ||| | || || | || ||| | |||||||||| |
Sbjct 1041797 TCCGGTACCGGGAGGGCCAACTAGGAGAACACCCTTGGGCAACTTGGCACCAAGGTCGCT 1041738
Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975
| | |||||| ||||| ||||| || |||| ||||| ||| ||||||||||| ||
Sbjct 1041737 GAACTTCTCAGGGTTCTTTAGGAACTCGACAACCTCCTGAAGCTCCTCCTTGGCCTCATC 1041678
Query 11976 GATACCCTCAACATCGGTGAAACGAGT 12002
| || | |||||| |||| || ||
Sbjct 1041677 GCAGCCGTGGACATCGCTGAATCGGGT 1041651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975241693400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |