Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq37 262 5e-65 seq54 87.8 2e-12 >seq37 Length=4018383 Score = 262 bits (290), Expect = 5e-65 Identities = 1031/1589 (65%), Gaps = 57/1589 (4%) Strand=Plus/Minus Query 105752 ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGA 105811 || |||||||| || ||||||| ||||| ||| | ||||| | | ||| || || Sbjct 715652 ATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGATGTTGGGGATGTTCTGG 715593 Query 105812 ATTGAACC---CCCCGCCTTGACCATGAGATCCTTCAT---ATCCTTGGACCAAAGACCA 105865 || ||||| | | || ||| | | | |||||| |||| ||||| || || Sbjct 715592 ATGGAACCGTTCTCAGCAATGA---TTCGGTTCTTCATGGAATCC---GACCACAGGCCC 715539 Query 105866 ATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTT 105925 || | |||||| |||| | ||| || | | ||||| || |||||| Sbjct 715538 ATATCGACGAGATCCTTGAGCAACCAGGGGTTAACGACCTGGAACTCGCCAGCGAGGACA 715479 Query 105926 CTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGT 105985 | | | | |||||||| | ||||| || || ||||| || || ||||||| ||| || Sbjct 715478 CGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGC 715419 Query 105986 GCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG 106045 | ||| ||| || ||||| || || | || |||||||| || ||| | |||||| Sbjct 715418 GAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGGGTACCATGCTCCTTG 715359 Query 106046 ATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATAT 106103 | | ||| ||||| |||||||| || || | || ||||| |||| |||| | Sbjct 715358 ACCTGCTCCCTGAGAGACTCCCAGTCCCAGA-GATCAGAGGGCTTCACGTTCC-ACATGT 715301 Query 106104 CAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGG 106163 | || || || | || | || | ||||| |||| || || || | ||| | Sbjct 715300 CGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAAGGTAGAGTAAGGACCCTCCT 715241 Query 106164 CTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 106222 | | |||| | ||| | || ||| | || || || ||||| |||||||| | Sbjct 715240 CCTTGGCCAGCTGCACGGAA-GCAGTCAGAGCAGCATGGTAGATGGTCTCAAAGATCTGC 715182 Query 106223 GCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAA-AATAAATACAT 106280 |||| ||| || ||| || || ||| || | ||| || | || || ||| Sbjct 715181 TTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCAT-GCG-CAGAGCAAGGAAAGCAT 715124 Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG 106340 | || ||||| || ||||| | |||||||||| ||||||||| || || | ||| || Sbjct 715123 CGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCATGTTG--CTGTTGCG-AG 715067 Query 106341 TCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 ||| ||||| || || ||||||| | ||| || || ||| ||| Sbjct 715066 CTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCAGGTTGCGAACGACAGTCT 715007 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACT 106454 ||||| || || || || | | ||| | || | ||| |||| ||| | Sbjct 715006 GTGTGACCTCGTGCAGCTTCTGGAAGTCATA---GCAGGCCTCGTCATAGTTGATGAAAG 714950 Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 |||||||||| || || | || || ||||| |||||| | |||||| | Sbjct 714949 AGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGA 714890 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 || || || |||| |||||| || ||| || |||| ||||| ||||| ||||| Sbjct 714889 TGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGC 714830 Query 106575 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAA 106634 |||||| |||||||||||||||| |||| | || ||||| ||||| | || ||| | Sbjct 714829 GGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGA 714770 Query 106635 TTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCT-CCGCCTCG 106690 | || | ||| | | || | | || |||| ||| ||| | || || ||| Sbjct 714769 TGGCATACCAGAGCTTCTGGGCCTTC----ATGGTCTTGCGACCCTTGCCGGCCTTCTCA 714714 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 ||||| ||| || || || ||||||||||| ||||| |||||| || || | Sbjct 714713 TACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGGGACACTCG 714654 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | ||||| | |||| ||| | ||| || ||| || ||||||||||| || || ||| Sbjct 714653 TTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGA 714594 Query 106811 ATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 ||||| || | | ||| | || || | | || ||||||| | || ||||| | Sbjct 714593 ATCCAGAGAGCCAGGAACA-AG-TCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGC 714536 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | ||||||||||| | || ||| |||||||| |||||||| |||| || | || | Sbjct 714535 GCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAAGCAC 714476 Query 106929 CCTTTCGACGC---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | ||| ||| | |||| || || || || ||| ||| || || ||||||| Sbjct 714475 CAGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGAAGCA 714416 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCT 107043 | || ||| ||| | || ||| || || || ||| || ||| | |||| | Sbjct 714415 TAGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGTAGGAGCC--AGTGGCACG 714358 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 | || | || || |||||||| |||||| ||| || || ||||| | | Sbjct 714357 GATTCGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTT 714298 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 ||||| |||| ||||| | || ||||||||| || ||| ||||||||| ||| Sbjct 714297 GAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGA 714238 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 | ||| || || ||||| |||||||||||||| || | || || ||| | | | Sbjct 714237 GAGCTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTGA--AGAAC 714180 Query 107224 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 ||| ||||| || ||| ||||| | |||| ||||||| || || ||||||| Sbjct 714179 TTGCTCGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGCCG 714120 Query 107282 ATGGCCACACGCATAAACATGTATTGGGG 107310 | || |||||||| | ||||| ||||| Sbjct 714119 ACAGCAACACGCATGATCATGTGCTGGGG 714091 >seq54 Length=1261221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||| || || || || || || |||||| || || Sbjct 1145455 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1145514 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||||||||| |||||||| | ||| | || | ||| || | || |||||||| Sbjct 1145515 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCACTGAAGAAGA 1145573 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCA 117450 ||||||| || || || |||| || |||| || ||||| ||| | |||| | Sbjct 1145574 TACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGA-AGAGTCCTTGTCCTGG 1145632 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTT 117479 | |||| | || ||||| | |||||||| Sbjct 1145633 ATCCATCTGATAGCCCAGTCGGCCTTCTT 1145661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980040399720