Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq32 116 4e-21 >seq32 Length=3227256 Score = 116 bits (128), Expect = 4e-21 Identities = 324/488 (66%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 154629 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC-ATACCA 154687 || || ||| | || | |||||||||| ||| || || || ||| |||| |||||| Sbjct 2548946 CAGCCCAACTCTGGTGCTCAGGGTGAGTTTGCTGGTCTTCGAGTCATC-AAGCGATACCA 2548888 Query 154688 TCAAGGATCAGGAGA----TGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATG 154743 | ||| ||||| ||| || ||| || || | || || | || || || | Sbjct 2548887 -CGAGGCCAAGGAGGGCGGTGAGAAGCGAACCGTCTGCCTCATCCCCGTCTCCGCCCACG 2548829 Query 154744 GAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG 154803 | || || ||||| ||||| | |||||| || ||||| |||||| ||||||| |||| Sbjct 2548828 GTACCAACCCTGCCAGTGCCGCCATGGCCGGTATGAAGGTTGTACCCATCAAGTGCGATG 2548769 Query 154804 --ATGA-TGGTAACATAGACATCAAAGATCTAGAG---AAGAAAGC-AATCATGAATACA 154856 | || ||||||| | ||||| | ||||| || ||| || || || | || Sbjct 2548768 GCAAGACTGGTAACCTGGACATTGAGGATCTCAAGGCCAAGTGCGCCAAGCACGCTGAC- 2548710 Query 154857 TTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAAC 154916 || ||| | || ||||| || ||||| || || |||||| ||||| || | Sbjct 2548709 ---GAGCTGGCTGCCATCATGATCACCTACCCTTCCACCTTTGGTGTCTTTGAGCCTGAG 2548653 Query 154917 ATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCA 154976 | | ||| | || | |||| || | ||||||||| || || | || || || Sbjct 2548652 GTCAAGCAGGTGTGCGACCTCGTCCACCAGCATGGTGGTCTCGTCTACATGGACGGTGCC 2548593 Query 154977 AATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCAT 155036 || | || || ||| | || || | || |||| ||| || ||||| || ||| Sbjct 2548592 AACATGAACGCCCAGATCGGTCTTTGCAGCCCTGGTGATATTGGCGCTGATGTCTGCCAT 2548533 Query 155037 CTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCT 155096 || ||| | || || || ||||||||||| || |||||||| || ||||| || |||||| Sbjct 2548532 CTGAACCTCCACAAGACCTTCTGTATTCCCCACGGAGGTGGTGGCCCTGGTGTTGGTCCT 2548473 Query 155097 ATAGGTGT 155104 || | ||| Sbjct 2548472 ATCGCTGT 2548465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212054263520