Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq32 104 3e-17 >seq32 Length=3227256 Score = 104 bits (114), Expect = 3e-17 Identities = 321/488 (66%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 159304 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC-ATACCA 159362 || || ||| | || | |||||||||| ||| || || || ||| |||| |||||| Sbjct 2548946 CAGCCCAACTCTGGTGCTCAGGGTGAGTTTGCTGGTCTTCGAGTCATC-AAGCGATACCA 2548888 Query 159363 TCAAGGATCAGGAGA----TGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATG 159418 | ||| ||||| ||| || ||| || || | || || | || || || | Sbjct 2548887 -CGAGGCCAAGGAGGGCGGTGAGAAGCGAACCGTCTGCCTCATCCCCGTCTCCGCCCACG 2548829 Query 159419 GAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG 159478 | || || ||||| || | ||||| || ||||| |||||| ||||||| |||| Sbjct 2548828 GTACCAACCCTGCCAGTGCCGCCATGGCCGGTATGAAGGTTGTACCCATCAAGTGCGATG 2548769 Query 159479 --ATGA-TGGCAACATAGACATCAAAGATCTAGAG---AAGAAAGC-AATCATGAATACA 159531 | || ||| ||| | ||||| | ||||| || ||| || || || | || Sbjct 2548768 GCAAGACTGGTAACCTGGACATTGAGGATCTCAAGGCCAAGTGCGCCAAGCACGCTGAC- 2548710 Query 159532 TTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAAC 159591 || ||| | || ||||| || || || || || |||||| ||||| | | Sbjct 2548709 ---GAGCTGGCTGCCATCATGATCACCTACCCTTCCACCTTTGGTGTCTTTGAGCCTGAG 2548653 Query 159592 ATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCA 159651 ||| ||| | || | | || || || ||||||||| || || | || ||||| Sbjct 2548652 GTCAAGCAGGTGTGCGACCTCGTCCACCAGCATGGTGGTCTCGTCTACATGGACGGTGCC 2548593 Query 159652 AATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCAT 159711 || | || || ||| | ||||| | || |||| ||| || ||||| || ||| Sbjct 2548592 AACATGAACGCCCAGATCGGTCTTTGCAGCCCTGGTGATATTGGCGCTGATGTCTGCCAT 2548533 Query 159712 CTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCT 159771 || ||| | || ||||| ||||||||||| || |||||||| || ||||| || |||||| Sbjct 2548532 CTGAACCTCCACAAGACCTTCTGTATTCCCCACGGAGGTGGTGGCCCTGGTGTTGGTCCT 2548473 Query 159772 ATTGGTGT 159779 || | ||| Sbjct 2548472 ATCGCTGT 2548465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050442884080