Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq32 116 2e-21 seq41 95.1 8e-15 >seq32 Length=3227256 Score = 116 bits (128), Expect = 2e-21 Identities = 146/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 1807437 TTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAA 1807496 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| | || | ||||||||||| |||||| || || | Sbjct 1807497 GATAAGTCGCTGCTGGTC-GGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCAC--A 1807553 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| || || | || ||| || || | || ||||| ||||| |||||||||| Sbjct 1807554 T--TATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCT 1807611 Query 34966 TCACAAAGATCTGCATA 34982 | ||||||||||||||| Sbjct 1807612 TGACAAAGATCTGCATA 1807628 Score = 86.0 bits (94), Expect = 4e-12 Identities = 123/171 (72%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || |||||| | || |||| || ||||| || ||||| || Sbjct 1808105 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 1808164 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||| ||||| || Sbjct 1808165 ATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGAC--AT 1808222 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| ||| || |||||| |||| ||| ||||| || ||||| Sbjct 1808223 --TGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGT 1808271 >seq41 Length=1307349 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||| || ||||||||||| || Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCATCTT 954556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633192483384