Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq32 116 2e-21
seq41 95.1 8e-15
>seq32
Length=3227256
Score = 116 bits (128), Expect = 2e-21
Identities = 146/197 (74%), Gaps = 9/197 (5%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||||||||| ||||| || ||| | || | || |||||||| || || |||||
Sbjct 1807437 TTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAA 1807496
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| ||||| |||||||| | || | ||||||||||| |||||| || || |
Sbjct 1807497 GATAAGTCGCTGCTGGTC-GGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCAC--A 1807553
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| |||| || || | || ||| || || | || ||||| ||||| ||||||||||
Sbjct 1807554 T--TATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCT 1807611
Query 34966 TCACAAAGATCTGCATA 34982
| |||||||||||||||
Sbjct 1807612 TGACAAAGATCTGCATA 1807628
Score = 86.0 bits (94), Expect = 4e-12
Identities = 123/171 (72%), Gaps = 8/171 (5%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || |||||| | || |||| || ||||| || ||||| ||
Sbjct 1808105 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 1808164
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | ||||||||||| ||||||| ||||| ||
Sbjct 1808165 ATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGAC--AT 1808222
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957
| ||||| ||| || |||||| |||| ||| ||||| || |||||
Sbjct 1808223 --TGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGT 1808271
>seq41
Length=1307349
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| ||||| ||| | || |||| ||
Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || ||||| |||||||| | || | |||||||||||
Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | ||| || || ||
Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
||||| || ||||| || ||||||||||| ||
Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCATCTT 954556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633192483384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |