Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq28 102 7e-17 >seq28 Length=4887614 Score = 102 bits (112), Expect = 7e-17 Identities = 423/671 (63%), Gaps = 55/671 (8%) Strand=Plus/Minus Query 29760 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 29819 |||| ||||||| | ||| || | || || || || || || | || || || || Sbjct 3688030 CAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGTTGAGGGCATCGACATGGTC 3687971 Query 29820 CAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGA 29878 || |||||||| ||||| |||| | ||| | ||| || || ||| | | || || Sbjct 3687970 AAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGTACCAATTCGCAGA 3687912 Query 29879 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 29938 |||| |||||||||| || || | | ||||||||| ||||| || || || || || | Sbjct 3687911 CGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATGTTGAACGGAACGCCAAGAC 3687852 Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACA------------------CGAGAGCTC-- 29978 ||||||| | || | |||||||||||| || | | ||| Sbjct 3687851 CCATGTCGCAGGATCGCTGGTAGAGCTGGCAGTGTAGGTGGCCTTGGGGCTTGGCCTCGG 3687792 Query 29979 --------TCC-----------GTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAG 30019 ||| || | |||||||||||| | ||||||| || | Sbjct 3687791 GGTCGTCATCCTTTCGTCGGGGGTAGGAGACGTAAAACTGAGCAAACATGTGGCAGGGTG 3687732 Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30079 | || |||| || || ||||||||||||| | | ||| | || | || | Sbjct 3687731 GGAGGACCATCTTCTTCAGATCGGCGGGGTTCCAGGCGGAAAGGATCAGACGACGATCGT 3687672 Query 30080 CTGGGTTGTT------CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCC 30133 ||||||| | | || | | ||||| ||||| || || ||| | Sbjct 3687671 ATGGGTTGGTGCGCAGCTTGTGAATAATCTCGGCG------AGCTGGTCGACTCCCTGGC 3687618 Query 30134 CCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGT 30193 ||| |||||| | | | ||| |||||| || || || |||| ||||||||| |||| Sbjct 3687617 CCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCACCAAAGTGCCGCCACTGGAAGCCGT 3687558 Query 30194 ACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 30253 |||| || || ||||| || | || | ||| | || || ||||| | || || | Sbjct 3687557 ACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGACCGAGGTTGTCGAGGAACTCGC 3687498 Query 30254 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG- 30312 ||| || ||| ||||||||||||| | || |||| ||| ||||| |||| Sbjct 3687497 GGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTGAGGCTAGTGGAGGATGTGT 3687438 Query 30313 GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTC 30372 ||||| || |||||| || ||||| | | ||||| |||||| | |||||| Sbjct 3687437 TGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGCGCGGGTAAAGACGCGCTTGGTG 3687379 Query 30373 GTGAGGAGGGG 30383 ||||||||||| Sbjct 3687378 GTGAGGAGGGG 3687368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617087057219