Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq37 297 4e-75 seq54 226 5e-54 >seq37 Length=4018383 Score = 297 bits (328), Expect = 4e-75 Identities = 857/1287 (67%), Gaps = 65/1287 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| ||||| ||||||||||||||||||||| |||||| || |||| | ||||| || Sbjct 715217 GTCAGAGCAGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTCTCGAGCCTCAGG 715159 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| ||| ||||| ||||| | | ||||| | ||||| || ||||| || |||| Sbjct 715158 AGACTCGAAAGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGACCCTGGACACCGACG 715101 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || || | ||||| | ||||| | ||| ||||| || ||||| || ||| | Sbjct 715100 CCAATAGGTCGGTGTCGCATGTTGCTGTTGCGA--GCTTCAGGAACGGGGTAGTGGTTCA 715043 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGAT-GACTTTAACCACCTCGGTCAGCTTCTGG 221650 | || || | |||| ||||| || || | || | |||||| |||||||||| Sbjct 715042 CATCAATGATCCTGTTCAGGTTGCGAACGACAGTCTGTGTG-ACCTCGTGCAGCTTCTGG 714984 Query 221651 ---TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 | || | | || || | | || || | |||| | ||||| Sbjct 714983 AAGTCATAGCAGGCCT------CGTCATAGTTGATG---------AAAGAGGGAAGGGCG 714939 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | ||| |||||||| || || ||||| || | |||| |||||||| || Sbjct 714938 AGAGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTG 714879 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || |||||| || ||||| ||||||| || || || |||||| ||| ||| | Sbjct 714878 CACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTG 714820 Query 221828 -TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 |||||||||||||| ||||| |||||||| ||||||| | || || | ||| Sbjct 714819 ATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCA 714760 Query 221887 GAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCT---CGGTCTTTTCATAC--CCG 221941 ||| | ||||| || | | ||||| ||||| ||| ||| |||||| | Sbjct 714759 GAGCT-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTGCCGGCCTTCTCATACTTCTC 714706 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | || || |||||| | |||| Sbjct 714705 GTACAGAGCCT--CGAACTCCTCACCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGA 714648 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||||||| |||||| ||| | | ||| | || ||||||||| || || ||||| Sbjct 714647 CACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAG 714588 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 || ||| | || | || | | || ||| ||| ||||| ||| || | ||| || Sbjct 714587 AGAGCCAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCA 714528 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | |||||||| | || |||||||| ||||| || |||| ||| | ||| || |||||| Sbjct 714527 AGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGC 714468 Query 222182 TTGTTGCCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGT--CGG 222237 ||||||||||||||||| || ||| ||| | |||||||| ||||| | || Sbjct 714467 TTGTTGCCACCCTGATCGACGTATC--GGGCAGTGTTGTTGAAGACACGAAGCATAGGGG 714410 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 || || |||||||| ||||||||| || ||||| | || ||| | || | Sbjct 714409 TAACA--CCGTTGGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAGTGGCAC---GGAT 714355 Query 222298 ACTG-GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 | | ||| || || |||||||| || || || |||||||| ||| ||||||| Sbjct 714354 TCGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAG 714295 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 ||| || || ||||| ||| ||||||||| | || | || || || || || | Sbjct 714294 AGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAG 714235 Query 222415 CTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT 222474 ||||| | || | || || || || || ||||| ||| || || ||| | || Sbjct 714234 CTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 714175 Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGG 222533 ||||| || | ||| ||||| | ||| | | |||||||| ||| || | | | | Sbjct 714174 CGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATGTTGTCACCCCAGATGCCG-ACAG 714116 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAG 222591 | | |||| ||||| |||||| | ||| ||| | | | | | | ||| || Sbjct 714115 CAACACGCATGATCATGTGCTGGGGGCGCTCAACA--ATCTTGCCATCAATCTTGAGGAG 714058 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| ||| || ||||||||||| |||||||| | | | ||||| | | | | || Sbjct 714057 GTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGAC 713998 Query 222652 CACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||||| ||| |||||| |||||| Sbjct 713997 AATGGCGGAGTCTAGCTCCTCCTTGTG 713971 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 715509 GTTAACGACCTGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGG 715450 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||| ||||||||||| | |||||||| ||||||||||| || | Sbjct 715449 CTCGAAGCACTCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAG 715390 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 715389 CAGCAGACTGTTGCG 715375 >seq54 Length=1261221 Score = 226 bits (250), Expect = 5e-54 Identities = 568/857 (66%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| ||||| |||||||||||| Sbjct 1146009 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 1145950 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || || ||||||||| || || Sbjct 1145949 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACCTCTGACGAGCAGTTCTTCATCTC 1145891 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||| || || || ||||||||||| ||| | Sbjct 1145890 TCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGTTGAGCG 1145831 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 1145830 ATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 1145771 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGA--CGTC 25770 || || | ||||| ||| || || ||| | || ||||| | || | || Sbjct 1145770 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCTTC 1145711 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | | || | | || || ||||| ||| ||| || ||||| | |||||| Sbjct 1145710 TCAGCGA-ACCTAT-CTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGAAGGCC 1145653 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| || | |||||| | | || | || | |||| |||| || || ||| Sbjct 1145652 GACTGGGCTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTGCC 1145593 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 || ||||| || ||||| ||||| ||||| ||| | ||||| ||||||||||||||||| Sbjct 1145592 TTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCTTCCATCTTCTGGCTCAAG 1145533 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||||||| ||| ||| ||||||||||||||| | || |||||| Sbjct 1145532 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 1145473 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TC 26068 || |||| || ||||||||||| ||| || | |||| ||| | | | | | Sbjct 1145472 CTTCACACCGACTTTGCCTGCCTCCTCCACTC---CCAC---CTCAAGGGCCGTGCCAGC 1145419 Query 26069 AAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| ||| | || | ||||||| || || || || ||| ||||||| | Sbjct 1145418 AAGCAGATCATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACT 1145359 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| || ||||||| || ||||| ||| Sbjct 1145358 GAGGCTCTCCCCTGCGCCCTCCTCGGCATGAACGCCAACCTCATGAAGCAGTACATCGAG 1145299 Query 26188 TATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244 | || ||||||| ||| || || ||| ||||| || | ||||| ||| ||| Sbjct 1145298 TTCGTCGCCGACCGTCTCCTCGTCGCC--CTGGGCAACGAGAAGGTCTACAAGTCTGCC- 1145242 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| Sbjct 1145241 AACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAG 1145182 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 1145181 CGTGTCGGTGACTACCA 1145165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843604112320