Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq32 113 5e-20 >seq32 Length=3227256 Score = 113 bits (124), Expect = 5e-20 Identities = 323/488 (66%), Gaps = 18/488 (4%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | |||||||| || ||||| || |||||||| || ||||||||||| ||||| || Sbjct 2548465 ACAGCGATAGGACCAACACCAGGGCCACCACCTCCGTGGGGAATACAGAAGGTCTTGTGG 2548524 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| || ||| |||| || | ||||| | ||| || Sbjct 2548525 AGGTTCAGATGGCAGACATCAGCGCCAATATCACCAGGGCTGCAAAGACCGATCTGGGCG 2548584 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || ||||||||| | || |||| | || | | Sbjct 2548585 TTCATGTTGGCACCGTCCATGTAGACGAGACCACCATGCTGGTGGACGAGGTCGCACACC 2548644 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || ||| | | ||||| |||||| || || || || || ||||| || | Sbjct 2548645 TGCTTGACCTCAGGCTCAAAGACACCAAAGGTGGAAGGGTAGGTGATCATGATGGCAGCC 2548704 Query 138423 AGTTCAAATGTATTCATGATT-GCTTTCTT---CTCTAGATCTTTGATGTCTATGTTGCC 138478 || || || | || || || ||| || ||||| | ||||| | ||| || Sbjct 2548705 AGCTC----GTCAGCGTGCTTGGCGCACTTGGCCTTGAGATCCTCAATGTCCAGGTTACC 2548760 Query 138479 A-TCAT--CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 | || | |||| ||||||| |||||| ||||| || |||||| | ||||| ||||| Sbjct 2548761 AGTCTTGCCATCGCACTTGATGGGTACAACCTTCATACCGGCCATGGCGGCACTGGCAGG 2548820 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCA----TCTCCTG 138591 || || || || || || | || || || || || ||| || ||| ||||| Sbjct 2548821 GTTGGTACCGTGGGCGGAGACGGGGATGAGGCAGACGGTTCGCTTCTCACCGCCCTCCTT 2548880 Query 138592 ATCCTTGATGATAT-GCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCG 138650 ||| | || ||| |||| ||| || || || ||| |||||||||| | || | | Sbjct 2548881 GGCCTCG-TGGTATCGCTT-GATGACTCGAAGACCAGCAAACTCACCCTGAGCACCAGAG 2548938 Query 138651 TTAGGTTG 138658 || || || Sbjct 2548939 TTGGGCTG 2548946 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 ||||||| || || || || || || || ||||||||||| ||||| || || |||| | Sbjct 2549642 CAGACATGTTGGCCAGAAGAGCCTGGGCGGTGCAGATGTTGCTGGTGGCCTTTTCTCGGC 2549701 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCA 139413 ||| |||||||| | || || || || | | | ||||| ||||| | |||| Sbjct 2549702 GAATGTGCTGCTCACGGGTCTGAAGAGCGAGACGGAGAGCAGGCTTGCCGAGTCGGTCCT 2549761 Query 139414 CTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGA 139473 || ||| |||| | || || ||||| | ||| ||||| || | || || |||| Sbjct 2549762 TGGAAACACCAACAAGACGACCGGGGATCTTGCGCTTGTACTTCTCCGAAGTAGCGAAGA 2549821 Query 139474 ATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAA 139512 | || ||||||||||| ||||| |||| ||||| ||||| Sbjct 2549822 AGGCGGCATGAGGACCACCGTAGCCCAGAGGAACACCAA 2549860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997654539560