Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq37 242 4e-59 seq54 87.8 2e-12 seq57 84.2 3e-11 >seq37 Length=4018383 Score = 242 bits (268), Expect = 4e-59 Identities = 1114/1725 (65%), Gaps = 89/1725 (5%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| || |||||| ||| || |||| | | ||||||| | Sbjct 714025 TACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAA--GATTGATGGCAAGATTG 714082 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || ||| ||| ||||| ||||||| || || |||||||| || || |||||| Sbjct 714083 TTGAGCGCCCCCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGTGACAACATTG 714142 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | |||| | ||||| ||| || ||||| |||| | | ||| || || | || Sbjct 714143 AGCGTGTCCTCGAGACTTACAACCTCATGTCGAGCAAGTTCT--TCACCCATGCCTCCCC 714200 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 |||||||||||||| ||||| || || ||| | ||| ||||||||| ||| || Sbjct 714201 CACCCTCTTCAATGCGGGTACTCCCCAGCCTCAGCTCTCCTCATGCTTCCTTGTCGACAT 714260 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||||||| || | ||||| |||| ||||| | | ||||| || || || Sbjct 714261 GAAGGAGGACAGTATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATTTCCAA 714320 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTC 75500 | |||||| |||||||| || || | || | | |||| | ||| || || Sbjct 714321 GATGGCTGGTGGTATTGGTCTGAACGTGCACCGAATCCGTGCCACT--GGCTCCTACATC 714378 Query 75501 G-GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 | || || || ||| || | ||| ||| || |||||||| || || ||| ||| Sbjct 714379 GCCGGTACCAACGGTACCTCCAACGGTGTTACCCCTATGCTTCGTGTCTTCAACAACACT 714438 Query 75560 GCGCGCTATGTAAATCAAGCGGGGCGTC--GCAA--GGGGTCCATCGCGGTCTACTTGGA 75615 || || || || ||| || | ||| | || | || | | || ||||| | || Sbjct 714439 GCCCGATACGTCGATC-AGGGTGGCAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGA 714497 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || ||| || | ||||||||||| | || ||||| || | ||||| Sbjct 714498 GCCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGA 714557 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 || || | | || || | ||| | | || |||||||| || || ||||||||||| Sbjct 714558 GGTCCGCGCTCGCGA-CT-TGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGT 714615 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 || ||| || ||| | ||| |||| | ||||| || || || |||||| ||||| Sbjct 714616 GTCGAGAAGAACGGTGACTGGACTCTGATGTGTCCCAACGAGTGTCCCGGTCTCGCCGAC 714675 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG------AGGGTAGA 75847 ||||||||||| || || || ||| |||||||| ||| ||||| | Sbjct 714676 TGCTACGGTGAGGAGTTCGAGGCTCTGTACGAGAAGTATGAGAAGGCCGGCAAGGGTCG- 714734 Query 75848 GCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGA 75906 ||| ||| | || | | || | | ||| | || || ||| | | ||||| || Sbjct 714735 --CAA---GACCAT-GAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGA 714788 Query 75907 GACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAA 75966 |||||| | || | ||||| ||||||||| || ||| ||||| ||||| ||||| Sbjct 714789 GACTGGTAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAA 714848 Query 75967 TTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGA 76026 |||| || || ||||| || || ||||| || || | |||||| | || Sbjct 714849 CCTGGGTACCATTCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGA 714908 Query 76027 TGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGA 76083 |||| ||||| || || | || || |||||||||| | ||| |||| || Sbjct 714909 TGAGGTTGCTGTCTGTAACCTTGCCTCTCTCGCCCTTCCCTCTTTCATCAACTATGACGA 714968 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | | || | ||| | | || || || || ||||| ||| ||| || || Sbjct 714969 GGCCTGC---TATGACTTCCAGAAGCTGCACGAGGTCACACAGACTGTCGTTCGCAACCT 715025 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATAT 76200 ||| | ||||||| || || ||||| ||| || ||| | || || || Sbjct 715026 GAACAGGATCATTGATGTGAACCACTACCCCGTTCCTGAAGCT-CGCAACAG--CAACAT 715082 Query 76201 GCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCC 76259 ||||||| |||||||||| | ||||| || ||||| || |||| || || | || | Sbjct 715083 GCGACACCGACCTATTGGCGTCGGTGTCCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-C 715141 Query 76260 GCTACGCATTT-GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318 || | || ||| || || ||| || ||| |||| | |||||||| ||||| Sbjct 715142 GC-ATGCCTTTCGAGTCTCCTGAGGCTCGAGAGCTGAACAAGCAGATCTTTGAGACCATC 715200 Query 76319 TATCACGCATCCCTGGAGGCGAGTT--GTG-AATTGGCTGAAGCCCAAGGTTCCTATGAG 76375 || || || | ||| || || ||| | |||| | | | ||| | || Sbjct 715201 TACCATGCTGCTCTGACTGC---TTCCGTGCAGCTGGCCAAGGAGGAGGGTCCTTACTCT 715257 Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAA 76435 || || |||| ||||| || || | || | || ||||| || |||| |||| ||||| Sbjct 715258 ACCTTCAAGGGCTCTCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAACGTGAA 715316 Query 76436 ACC--AAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493 || | || || |||||||| ||||| ||| | |||||||| | ||| | Sbjct 715317 GCCCTCTGATC-TCTGGGACTGGGAGTCTCTCAGGGAGCAGGTCAAGGAGCATGGTACCC 715375 Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553 | |||||||| || | || || ||||| || ||| ||| | || ||| ||||||| | Sbjct 715376 GCAACAGTCTGCTGCTTGCCCCCATGCCCACTGCCAGCACTTCGCAGATCCTGGGTAACA 715435 Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGT 76613 | || ||||| || || ||||| | |||||||||| | | | |||||| || |||| Sbjct 715436 ACGAGTGCTTCGAGCCTTACACCTCCAACATCTACCAGCGTCGTGTCCTCGCTGGCGAGT 715495 Query 76614 TTGTCATTGTCAACAAGCACCTCG----TCAATGACCTCAAGAAGATTGGTCTCTGGTCC 76669 | | || || | ||| | |||| || ||| | || || || ||||| Sbjct 715496 TCCAGGTCGTTAA----CCCCTGGTTGCTCAAGGATCTCGTCGATATGGGCCTGTGGTC- 715550 Query 76670 AAGGAT---ATGAAGGATC---TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTC 76722 |||| |||||| | | ||| || ||| | | |||||||| || || ||| | Sbjct 715551 --GGATTCCATGAAGAACCGAATCATTGCTGAGAAC----GGTTCCATCCAGAACATCCC 715604 Query 76723 AGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAA 76779 | ||||| | ||| ||||| ||||||| || |||||||| || | || | Sbjct 715605 CAACATCCCCGCTGAGGTCAAGGCTCTCTACAAGACCGTGTGGGAGATTTCCCAG-CGCC 715663 Query 76780 AGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 76824 || ||| | | ||||| || || || ||| |||||||||||| Sbjct 715664 AG--GTCGTCCAGATGGCAGCCGACCGAGGTGCCTTCATTGATCA 715706 >seq54 Length=1261221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || | |||| | | |||| | ||| ||||| || |||| Sbjct 1145661 AAGAAGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGACTCT-TCCTTTGCTCAGCG 1145603 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTT 65140 || |||| || || || ||||||||||||||| || | || ||| | || | Sbjct 1145602 TCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTT-TGCTTCCATCT 1145544 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| | |||||||| ||||||||||| || || |||||| || || || || || | Sbjct 1145543 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTC 1145484 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | ||||||||||| ||| || |||||| Sbjct 1145483 GTGATGAGGGTCTTCACACCGACTTTGCC 1145455 >seq57 Length=2357170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGT--GGTGCCAAGATC 175287 ||| ||||| || | ||||| ||||||| | || | |||| |||||||||||| Sbjct 874939 GAGTTTGTGAGCTTCTTGAAGCAGCCCGAGA---AGTTCGAGAAGCTCGGTGCCAAGATC 874995 Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 |||||||| || |||| || || || |||||||| ||||| || |||||| ||| Sbjct 874996 CCCCGAGGAGCAATTCTGGCTGGCCCCCCTGGTACGGGTAAGACACTGCTCGCCAAGGCC 875055 Query 175348 ATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGA 175405 | || || || || ||||| ||| | ||||| | || | | | || || |||| Sbjct 875056 ACGGCTGGCGAGTCTGGAGTCCCCTTC-TTCAGTG-TGAGCGGTTCTGAATTCGTCGAGA 875113 Query 175406 TGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATC 175465 ||||||| ||||| ||| | | || || ||||| || | | |||| | || Sbjct 875114 TGTTTGTGGGTGTTGGTCCTTCTCGTGTGCGAGATCTGTTCGCCGAAGGCCGCAAGAACG 875173 Query 175466 AACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 || || || |||||||||||||||| || || Sbjct 875174 CTCCTTGCATCATCTTCATTGATGAGATCGACGC 875207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568831916640