Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54 145 2e-29 seq37 129 2e-24 seq28 123 7e-23 seq43 98.7 3e-15 seq32 87.8 5e-12 >seq54 Length=1261221 Score = 145 bits (160), Expect = 2e-29 Identities = 260/372 (70%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || || ||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 1145823 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 1145764 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTC-CAGAA 133407 ||||| || || || || || ||||| || |||||||| || || || ||| Sbjct 1145763 ATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAG-CCTTCTCAGCG 1145705 Query 133408 GCACAAACTATTCAACGCCATTAGCGAATTTCC-TTGTATTAAAAAGAAATCTGACTGGG 133466 | | || |||||||||||| | || ||| ||| || ||||| | ||||||| Sbjct 1145704 AACCTATCTCTTCAACGCCATT-GAGACCATCCCTTGCATCCGCAAGAAGGCCGACTGGG 1145646 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 |||| | |||||||||||||||| | |||||| ||||||||||| || |||| Sbjct 1145645 CTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTGCCTTCGCTG 1145586 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGT 133585 || ||||| || || ||||||||||| || |||| | || || ||||| || |||||| Sbjct 1145585 CCGTCGAGGGTATCTTCTTCAGTGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGT 1145527 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCAC 133645 ||| | | || || ||| || || ||||| || || || | || |||| |||||| Sbjct 1145526 GGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 1145467 Query 133646 ACCGAATTTGCC 133657 ||||| |||||| Sbjct 1145466 ACCGACTTTGCC 1145455 >seq37 Length=4018383 Score = 129 bits (142), Expect = 2e-24 Identities = 583/917 (64%), Gaps = 13/917 (1%) Strand=Plus/Minus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 ||| || || ||||| || ||| ||| | | | | ||| || | |||||| ||| Sbjct 714936 AGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCA 714877 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 |||||| || || ||||| || | ||||||||||| || | ||| || ||| Sbjct 714876 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATC 714817 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||| | ||| | || ||||| |||| || || || || |||||| Sbjct 714816 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAG 714757 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| || || |||| |||| || |||||| ||| ||||| | Sbjct 714756 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGC 714697 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | ||||||||||| || || || || || |||| | ||| || | ||| | Sbjct 714696 CTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGT 714637 Query 155891 CCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947 ||| | || || ||| |||||| ||| || | ||| ||| | ||| Sbjct 714636 CCAGTCACCGTTCTTCTCGA---CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 714580 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007 ||| | ||| | || ||| || | |||||| ||||| || || || | ||| || Sbjct 714579 GAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 714520 Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CC 156064 | ||| | || ||||| || || || |||||| |||| | |||| || Sbjct 714519 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCC 714460 Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124 ||||||||| || || || ||||| || |||||||||| |||||||| ||| ||| || Sbjct 714459 ACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTT 714400 Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184 ||| || || ||||| ||| || | || |||| | || | || | | || Sbjct 714399 GGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGTTCAG 714340 Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 ||||||||||| | |||| || ||||| || || ||| | ||||| |||||| Sbjct 714339 ACCAATACCACCAG-CCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATAC 714281 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | |||||| || || | ||| | || |||| || | ||||| | || | Sbjct 714280 CCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAG 714221 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 | || || ||||| || || || | ||||| | || |||| | ||||| | || Sbjct 714220 TACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGT 714161 Query 156364 ATGTCTCCTTAATCTTCTCAA-GATTAGACCCGTGAATACAGATAGAGACCCTCATCCAC 156422 | ||||| | ||||| | | |||| | || | || || || | ||| | Sbjct 714160 AAGTCTCGAGGACACGCTCAATGTTGTCACCCCAG-ATGCCGACAGCAACACGCATGATC 714102 Query 156423 ATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGA 156482 || ||||| || ||||| |||||| |||||||| || ||||| | || || ||| Sbjct 714101 ATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGA 714042 Query 156483 GTTTTAAACCCGAAATA 156499 || || || || || || Sbjct 714041 GTCTTGAAGCCAAAGTA 714025 >seq28 Length=4887614 Score = 123 bits (136), Expect = 7e-23 Identities = 191/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| ||||| | || |||||||||||||| || | || || || || Sbjct 1877577 GTCTTCCAGGGCCTTGACCAGTCGTCGCTGAATATAACCTGTCTCGGCAGTCTTGACCGC 1877518 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 |||||||| ||||| | |||||| |||| || |||||||| | ||| || || Sbjct 1877517 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGGAAGGAGTCAG 1877458 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | || | ||| |||| ||||||||||| || |||||||| | || |||||| Sbjct 1877457 ACCACGAAGGTACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCATCCTTGGT 1877398 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | | || | | ||| | || ||||||||||| || || |||| Sbjct 1877397 GAAATGGGGCAGTGTGCGATACTTAAATCCGAAGGGAATACGCTTTCCTTCGACAATCTG 1877338 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| |||| || | ||||||| || || || Sbjct 1877337 CTGACCCACAAGCGCAGTCATCTGTGAGATGTT 1877305 Score = 105 bits (116), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| || || | | |||| ||||||||||||||||||||| | ||| |||| Sbjct 2255778 GAAGCTGAGAGGCGCCATAGGCGATCAAACAATCACGCTCCATTTCACCCAGACGCAGAC 2255719 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 | || || | | | ||| || | ||||||||| || || || || | ||||| ||| Sbjct 2255718 CGCCTTCTCTGGAACGACCTTCAGTAGGCTGACGTGTCAGGATAGCCTTGGGACCTCTGG 2255659 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | || || |||||| | ||||| ||||| || ||||||||| | ||||||| Sbjct 2255658 ATCGAGAGTGCATCTTATCTTGAACCATGTGCTTCAGGCGCTGGTAGTAGATGGGACCGT 2255599 Query 251654 TGAAGATG 251661 |||||||| Sbjct 2255598 TGAAGATG 2255591 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||| ||||| |||| ||||| |||||| | |||||||| Sbjct 1878353 AGAATTTCCTTGAGACGGGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 1878297 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| ||||||||||| || || || | Sbjct 1878296 AAATGGAACGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATGGACTGAGCAGCCAAA 1878237 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 1878236 ACACCAACCATTTCACCAGG 1878217 >seq43 Length=2522723 Score = 98.7 bits (108), Expect = 3e-15 Identities = 375/575 (65%), Gaps = 24/575 (4%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || || ||||| | | | ||||| || | ||| | || || |||| ||| || | Sbjct 667436 CAGACGTGGACTCGGAAGGCATCCGAAACTTCAAACAGGCGCTCCTTCAGGAAAGCAGCT 667377 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 667376 GCACCGTGGGCAATCATACAATCACGTTCCATCTCTCCGAATCGGAGACCACCATCTCGG 667317 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACCGATGGAGCGGCTAT 251602 || | ||| ||| | ||||| ||||| | ||| | | | ||||| | ||| | Sbjct 667316 GCACGACCTTCGACGGGCTGTCGAGTCATGATCTGA--ACGGGACCACGAGCTCGGGCGT 667259 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA--- 251659 | ||| || | ||||| || ||| ||||||||| | | || |||| ||| | Sbjct 667258 GGATCTTGTCGTCCACCATGTGACGGAGTCGCTGGTAGTAGGTAGGTCCGAAGAACACCT 667199 Query 251660 -TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGAT 251718 |||||||| |||| |||||| | |||| ||||| | ||| || || Sbjct 667198 GCGCTCGAAG---CTTGC-GTCCAGTATGGCCGTTGTACATGATCTCGAAACCTCGGGAC 667143 Query 251719 TCATAACCAAG-TTTC--TGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAA 251775 | || ||| | |||| | ||||| ||| | | | | ||| | | | ||| Sbjct 667142 TGGTAGCCATGCTTTCGGAGCAGCTCCGAAACGGAGT---CGACGGTGACATCGGTGAAA 667086 Query 251776 CTGGTGCCGTCTCCGTAAAGACCCATTTGA--ATCAACACTTTGCCTAAAAGTGTCTCTT 251833 || | || || | | || || || | |||| || | | || || Sbjct 667085 GGCGTTGCATCACCCTCCATGCC--TTCGAGCGTTGACACCTTACTGAGGAGGCATTCAA 667028 Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893 ||| ||||| || ||||| || |||||| || ||||| || ||||| ||||| ||| Sbjct 667027 TCAAATGGGCAATTGTCATTCGCGAGGGAATGGCGTGGGGGTTAATGATAATGTCTGGTG 666968 Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCC 251952 ||| || || ||||||||||||||| | || || || ||||| || ||| Sbjct 666967 TCACACCCTCCCTGCTGAAGGGCATATCCTCCT-GTCGGTAGGTGACACCAATTGTACCC 666909 Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||||||||||||| |||||| |||||||| Sbjct 666908 TTCTGTCCGTGACGAGAGGCGAACTTGTCACCAAT 666874 >seq32 Length=3227256 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||||||| | ||||| |||||||| || | ||| || ||||| |||||||| | |||| Sbjct 1070073 GGCGAGACCGCCAAGGGAGTCACGATCCAAGAAGTTGGTAGGCTCGTCAAGCACCAGAAG 1070014 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || |||| | || ||||| ||||||||||| || || || Sbjct 1070013 ATGGGGGTTGTTCCACATGGCACCAGCGATGACGACCTTGACCTTCTGTCCACCAGACAG 1069954 Query 354135 TGCGTGAATCT 354145 || | ||||| Sbjct 1069953 TGAGCCAATCT 1069943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815657660711