Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq54 145 2e-29
seq37 129 2e-24
seq28 123 7e-23
seq43 98.7 3e-15
seq32 87.8 5e-12
>seq54
Length=1261221
Score = 145 bits (160), Expect = 2e-29
Identities = 260/372 (70%), Gaps = 6/372 (2%)
Strand=Plus/Minus
Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348
|| || ||||| | |||| || || ||| || || | ||||| |||||| ||
Sbjct 1145823 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 1145764
Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTC-CAGAA 133407
||||| || || || || || ||||| || |||||||| || || || |||
Sbjct 1145763 ATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAG-CCTTCTCAGCG 1145705
Query 133408 GCACAAACTATTCAACGCCATTAGCGAATTTCC-TTGTATTAAAAAGAAATCTGACTGGG 133466
| | || |||||||||||| | || ||| ||| || ||||| | |||||||
Sbjct 1145704 AACCTATCTCTTCAACGCCATT-GAGACCATCCCTTGCATCCGCAAGAAGGCCGACTGGG 1145646
Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526
|||| | |||||||||||||||| | |||||| ||||||||||| || ||||
Sbjct 1145645 CTATCAGATGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGTCTCGTTGCCTTCGCTG 1145586
Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGT 133585
|| ||||| || || ||||||||||| || |||| | || || ||||| || ||||||
Sbjct 1145585 CCGTCGAGGGTATCTTCTTCAGTGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGT 1145527
Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCAC 133645
||| | | || || ||| || || ||||| || || || | || |||| ||||||
Sbjct 1145526 GGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 1145467
Query 133646 ACCGAATTTGCC 133657
||||| ||||||
Sbjct 1145466 ACCGACTTTGCC 1145455
>seq37
Length=4018383
Score = 129 bits (142), Expect = 2e-24
Identities = 583/917 (64%), Gaps = 13/917 (1%)
Strand=Plus/Minus
Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCA 155650
||| || || ||||| || ||| ||| | | | | ||| || | |||||| |||
Sbjct 714936 AGAGGCAAGGTTACAGACAGCAACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCA 714877
Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710
|||||| || || ||||| || | ||||||||||| || | ||| || |||
Sbjct 714876 CAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATC 714817
Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770
|||||| || ||| | ||| | || ||||| |||| || || || || ||||||
Sbjct 714816 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAG 714757
Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830
| |||| || || |||| |||| || |||||| ||| ||||| |
Sbjct 714756 CTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGC 714697
Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890
| | ||||||||||| || || || || || |||| | ||| || | ||| |
Sbjct 714696 CTCGAACTCCTCACCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGT 714637
Query 155891 CCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATA 155947
||| | || || ||| |||||| ||| || | ||| ||| | |||
Sbjct 714636 CCAGTCACCGTTCTTCTCGA---CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 714580
Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTC 156007
||| | ||| | || ||| || | |||||| ||||| || || || | ||| ||
Sbjct 714579 GAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 714520
Query 156008 CTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CC 156064
| ||| | || ||||| || || || |||||| |||| | |||| ||
Sbjct 714519 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCC 714460
Query 156065 ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATT 156124
||||||||| || || || ||||| || |||||||||| |||||||| ||| ||| ||
Sbjct 714459 ACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTT 714400
Query 156125 GGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAG 156184
||| || || ||||| ||| || | || |||| | || | || | | ||
Sbjct 714399 GGAGGTACCGTTGGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGTTCAG 714340
Query 156185 TCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243
||||||||||| | |||| || ||||| || || ||| | ||||| ||||||
Sbjct 714339 ACCAATACCACCAG-CCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATAC 714281
Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303
| |||||| || || | ||| | || |||| || | ||||| | || |
Sbjct 714280 CCTCAATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAG 714221
Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363
| || || ||||| || || || | ||||| | || |||| | ||||| | ||
Sbjct 714220 TACCCGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGT 714161
Query 156364 ATGTCTCCTTAATCTTCTCAA-GATTAGACCCGTGAATACAGATAGAGACCCTCATCCAC 156422
| ||||| | ||||| | | |||| | || | || || || | ||| |
Sbjct 714160 AAGTCTCGAGGACACGCTCAATGTTGTCACCCCAG-ATGCCGACAGCAACACGCATGATC 714102
Query 156423 ATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGA 156482
|| ||||| || ||||| |||||| |||||||| || ||||| | || || |||
Sbjct 714101 ATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGA 714042
Query 156483 GTTTTAAACCCGAAATA 156499
|| || || || || ||
Sbjct 714041 GTCTTGAAGCCAAAGTA 714025
>seq28
Length=4887614
Score = 123 bits (136), Expect = 7e-23
Identities = 191/273 (70%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||||| ||||| | || |||||||||||||| || | || || || ||
Sbjct 1877577 GTCTTCCAGGGCCTTGACCAGTCGTCGCTGAATATAACCTGTCTCGGCAGTCTTGACCGC 1877518
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | |||||| |||| || |||||||| | ||| || ||
Sbjct 1877517 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGGAAGGAGTCAG 1877458
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | || | ||| |||| ||||||||||| || |||||||| | || ||||||
Sbjct 1877457 ACCACGAAGGTACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCATCCTTGGT 1877398
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || ||||| || | | || | | ||| | || ||||||||||| || || ||||
Sbjct 1877397 GAAATGGGGCAGTGTGCGATACTTAAATCCGAAGGGAATACGCTTTCCTTCGACAATCTG 1877338
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||| |||| || | ||||||| || || ||
Sbjct 1877337 CTGACCCACAAGCGCAGTCATCTGTGAGATGTT 1877305
Score = 105 bits (116), Expect = 2e-17
Identities = 137/188 (73%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533
||||| |||| || || | | |||| ||||||||||||||||||||| | ||| ||||
Sbjct 2255778 GAAGCTGAGAGGCGCCATAGGCGATCAAACAATCACGCTCCATTTCACCCAGACGCAGAC 2255719
Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593
| || || | | | ||| || | ||||||||| || || || || | ||||| |||
Sbjct 2255718 CGCCTTCTCTGGAACGACCTTCAGTAGGCTGACGTGTCAGGATAGCCTTGGGACCTCTGG 2255659
Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653
| || || |||||| | ||||| ||||| || ||||||||| | |||||||
Sbjct 2255658 ATCGAGAGTGCATCTTATCTTGAACCATGTGCTTCAGGCGCTGGTAGTAGATGGGACCGT 2255599
Query 251654 TGAAGATG 251661
||||||||
Sbjct 2255598 TGAAGATG 2255591
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | |||||| ||||| |||| ||||| |||||| | ||||||||
Sbjct 1878353 AGAATTTCCTTGAGACGGGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 1878297
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | ||||||| ||||||||||| || || || |
Sbjct 1878296 AAATGGAACGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATGGACTGAGCAGCCAAA 1878237
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 1878236 ACACCAACCATTTCACCAGG 1878217
>seq43
Length=2522723
Score = 98.7 bits (108), Expect = 3e-15
Identities = 375/575 (65%), Gaps = 24/575 (4%)
Strand=Plus/Minus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484
|| || ||||| | | | ||||| || | ||| | || || |||| ||| || |
Sbjct 667436 CAGACGTGGACTCGGAAGGCATCCGAAACTTCAAACAGGCGCTCCTTCAGGAAAGCAGCT 667377
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | ||||||||||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 667376 GCACCGTGGGCAATCATACAATCACGTTCCATCTCTCCGAATCGGAGACCACCATCTCGG 667317
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACCGATGGAGCGGCTAT 251602
|| | ||| ||| | ||||| ||||| | ||| | | | ||||| | ||| |
Sbjct 667316 GCACGACCTTCGACGGGCTGTCGAGTCATGATCTGA--ACGGGACCACGAGCTCGGGCGT 667259
Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA--- 251659
| ||| || | ||||| || ||| ||||||||| | | || |||| ||| |
Sbjct 667258 GGATCTTGTCGTCCACCATGTGACGGAGTCGCTGGTAGTAGGTAGGTCCGAAGAACACCT 667199
Query 251660 -TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGAT 251718
|||||||| |||| |||||| | |||| ||||| | ||| || ||
Sbjct 667198 GCGCTCGAAG---CTTGC-GTCCAGTATGGCCGTTGTACATGATCTCGAAACCTCGGGAC 667143
Query 251719 TCATAACCAAG-TTTC--TGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAA 251775
| || ||| | |||| | ||||| ||| | | | | ||| | | | |||
Sbjct 667142 TGGTAGCCATGCTTTCGGAGCAGCTCCGAAACGGAGT---CGACGGTGACATCGGTGAAA 667086
Query 251776 CTGGTGCCGTCTCCGTAAAGACCCATTTGA--ATCAACACTTTGCCTAAAAGTGTCTCTT 251833
|| | || || | | || || || | |||| || | | || ||
Sbjct 667085 GGCGTTGCATCACCCTCCATGCC--TTCGAGCGTTGACACCTTACTGAGGAGGCATTCAA 667028
Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893
||| ||||| || ||||| || |||||| || ||||| || ||||| ||||| |||
Sbjct 667027 TCAAATGGGCAATTGTCATTCGCGAGGGAATGGCGTGGGGGTTAATGATAATGTCTGGTG 666968
Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCC 251952
||| || || ||||||||||||||| | || || || ||||| || |||
Sbjct 666967 TCACACCCTCCCTGCTGAAGGGCATATCCTCCT-GTCGGTAGGTGACACCAATTGTACCC 666909
Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| |||||||||||||| |||||| ||||||||
Sbjct 666908 TTCTGTCCGTGACGAGAGGCGAACTTGTCACCAAT 666874
>seq32
Length=3227256
Score = 87.8 bits (96), Expect = 5e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074
||||||| | ||||| |||||||| || | ||| || ||||| |||||||| | ||||
Sbjct 1070073 GGCGAGACCGCCAAGGGAGTCACGATCCAAGAAGTTGGTAGGCTCGTCAAGCACCAGAAG 1070014
Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
|| || | ||||||| || |||| | || ||||| ||||||||||| || || ||
Sbjct 1070013 ATGGGGGTTGTTCCACATGGCACCAGCGATGACGACCTTGACCTTCTGTCCACCAGACAG 1069954
Query 354135 TGCGTGAATCT 354145
|| | |||||
Sbjct 1069953 TGAGCCAATCT 1069943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471815657660711
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |