Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq54 132 6e-25
seq37 129 7e-24
seq57 114 2e-19
seq40 87.8 2e-11
>seq54
Length=1261221
Score = 132 bits (146), Expect = 6e-25
Identities = 180/250 (72%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | || |||||
Sbjct 1145159 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 1145218
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| || || | ||
Sbjct 1145219 TTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTGCCCAGGGCGACG 1145278
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || ||||||||||| |||||||||||||| ||||||| |||||||||||||| |
Sbjct 1145279 AGGAGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGG 1145338
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| ||| ||||| | ||| || |||||| || ||||
Sbjct 1145339 AGGGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATG 1145398
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 1145399 ATGT-CCTGG 1145407
Score = 114 bits (126), Expect = 2e-19
Identities = 204/291 (70%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || ||||||||||| || |||||
Sbjct 1145473 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 1145532
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| |||||| | || || || | | ||| ||||| ||||||||||| ||
Sbjct 1145533 CTTGAGCCAGAAGATG--GAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCG 1145590
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
||| | | ||| |||| |||||| | ||| |||||| | |||||| | ||
Sbjct 1145591 AAGGCAACGAGACGCTGAGCAAAG--GAAGAG----TCCTTGTCCTGGATCCATCTGATA 1145644
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
|||||||||||||| || | | | || | || || |||||| ||||| | |||
Sbjct 1145645 GCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTT 1145704
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| | | || ||||||| |||||||| || || || || ||||||||
Sbjct 1145705 C-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 1145754
>seq37
Length=4018383
Score = 129 bits (142), Expect = 7e-24
Identities = 94/109 (86%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| | ||||||||||| |||||||| || || ||| |||| |||||| | || ||||||
Sbjct 1987593 GCCTCTAACTACCTCGATATCAAGCCCCTTCTTGATGTTGGCTGCAAGACCGTCGCCAAC 1987534
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 1987533 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACATTCAACATCA 1987485
Score = 87.8 bits (96), Expect = 2e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || |||||| ||||||||||||| | || | ||||||||||||| |||||||
Sbjct 714895 ACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAA-TGGTACCCAGGTTCTTCTGGTTG 714837
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | ||||||| ||||||| |||| || |||||| |||| |||
Sbjct 714836 CTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCC 714777
Query 1628281 GCGACGATGGCCGACCAGATCT 1628302
||| |||||| |||||| ||
Sbjct 714776 TCGAGGATGGCATACCAGAGCT 714755
>seq57
Length=2357170
Score = 114 bits (126), Expect = 2e-19
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105
|||| | || ||| ||| |||| || |||||| || ||||||||||||| || ||| ||
Sbjct 698163 AAGAAGGTCACCCTACCGGCCGGCCGTCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 698222
Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165
| || |||| ||||| || || || || |||||||| | || ||||||||||
Sbjct 698223 ATGACCTCGGGCGCCCAACAAGCACTCCGACGAACCATGGAGATTTACTCCAACACGACT 698282
Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225
|| || ||| | || || ||| |||| | | |||||||| |||| ||| || |||
Sbjct 698283 CGATTCGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAGCCCCTACAATCACGATGC 698342
Query 1574226 GCCATTCTGCG 1574236
|||||||||||
Sbjct 698343 GCCATTCTGCG 698353
>seq40
Length=2584874
Score = 87.8 bits (96), Expect = 2e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417
||||| ||||| |||||||||| || ||| | | ||||| || || ||||| || ||
Sbjct 409841 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTATTAAGGCCTCCTCT 409782
Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477
||||| ||||| ||||| ||||| | ||||||||||||||||| || |||
Sbjct 409781 GGCGGCGGCCGAAGCAGCGCCCGTGAGACTATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 409722
Query 18478 GAGAAATGGCT 18488
||||| |||||
Sbjct 409721 GAGAAGTGGCT 409711
Score = 86.0 bits (94), Expect = 8e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
|| |||||||||||||||||||||||| | || || |||||||||||||| ||||
Sbjct 409418 GGTCTCGGCGAGCCGTGCTTTGACAAGCTTGAAGCTCTCCTCGCCCACGCCATCATGTCT 409359
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
|| || || || ||||| || |||||||||
Sbjct 409358 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 409329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107130747337651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |