Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq54 132 6e-25 seq37 129 7e-24 seq57 114 2e-19 seq40 87.8 2e-11 >seq54 Length=1261221 Score = 132 bits (146), Expect = 6e-25 Identities = 180/250 (72%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 1145159 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 1145218 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| || || | || Sbjct 1145219 TTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTGCCCAGGGCGACG 1145278 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| |||||||||||||| ||||||| |||||||||||||| | Sbjct 1145279 AGGAGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGG 1145338 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||| | ||| || |||||| || |||| Sbjct 1145339 AGGGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATG 1145398 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 1145399 ATGT-CCTGG 1145407 Score = 114 bits (126), Expect = 2e-19 Identities = 204/291 (70%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || ||||||||||| || ||||| Sbjct 1145473 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 1145532 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| |||||| | || || || | | ||| ||||| ||||||||||| || Sbjct 1145533 CTTGAGCCAGAAGATG--GAAGCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCG 1145590 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 ||| | | ||| |||| |||||| | ||| |||||| | |||||| | || Sbjct 1145591 AAGGCAACGAGACGCTGAGCAAAG--GAAGAG----TCCTTGTCCTGGATCCATCTGATA 1145644 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||||||||| || | | | || | || || |||||| ||||| | ||| Sbjct 1145645 GCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTT 1145704 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | || ||||||| |||||||| || || || || |||||||| Sbjct 1145705 C-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 1145754 >seq37 Length=4018383 Score = 129 bits (142), Expect = 7e-24 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | ||||||||||| |||||||| || || ||| |||| |||||| | || |||||| Sbjct 1987593 GCCTCTAACTACCTCGATATCAAGCCCCTTCTTGATGTTGGCTGCAAGACCGTCGCCAAC 1987534 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 1987533 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACATTCAACATCA 1987485 Score = 87.8 bits (96), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||| ||||||||||||| | || | ||||||||||||| ||||||| Sbjct 714895 ACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAA-TGGTACCCAGGTTCTTCTGGTTG 714837 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | ||||||| ||||||| |||| || |||||| |||| ||| Sbjct 714836 CTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCC 714777 Query 1628281 GCGACGATGGCCGACCAGATCT 1628302 ||| |||||| |||||| || Sbjct 714776 TCGAGGATGGCATACCAGAGCT 714755 >seq57 Length=2357170 Score = 114 bits (126), Expect = 2e-19 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 |||| | || ||| ||| |||| || |||||| || ||||||||||||| || ||| || Sbjct 698163 AAGAAGGTCACCCTACCGGCCGGCCGTCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 698222 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165 | || |||| ||||| || || || || |||||||| | || |||||||||| Sbjct 698223 ATGACCTCGGGCGCCCAACAAGCACTCCGACGAACCATGGAGATTTACTCCAACACGACT 698282 Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225 || || ||| | || || ||| |||| | | |||||||| |||| ||| || ||| Sbjct 698283 CGATTCGCCTTTGCCTGTAACCAGTCGAACAAGATCATCGAGCCCCTACAATCACGATGC 698342 Query 1574226 GCCATTCTGCG 1574236 ||||||||||| Sbjct 698343 GCCATTCTGCG 698353 >seq40 Length=2584874 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || || ||||| || || Sbjct 409841 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTATTAAGGCCTCCTCT 409782 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| ||||| ||||| ||||| | ||||||||||||||||| || ||| Sbjct 409781 GGCGGCGGCCGAAGCAGCGCCCGTGAGACTATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 409722 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 409721 GAGAAGTGGCT 409711 Score = 86.0 bits (94), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 || |||||||||||||||||||||||| | || || |||||||||||||| |||| Sbjct 409418 GGTCTCGGCGAGCCGTGCTTTGACAAGCTTGAAGCTCTCCTCGCCCACGCCATCATGTCT 409359 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 409358 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 409329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130747337651