Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq54 154 2e-31 seq37 125 1e-22 >seq54 Length=1261221 Score = 154 bits (170), Expect = 2e-31 Identities = 237/333 (71%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 1145473 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 1145532 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||| ||||||| | | || || | | ||| ||||| ||||||||||| || Sbjct 1145533 CTTGAGCCAGAAGATGGAA--GCAAAGGCACCACTGAAGAAGATACCCTCGACGGCAGCG 1145590 Query 794458 AAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATC 794514 ||| | ||||| |||| ||||| || |||| | ||| |||||| | || Sbjct 1145591 AAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTG------GATCCATCTGATA 1145644 Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 794573 ||||| || ||||| || | | | || | || || |||||| ||||| | ||| Sbjct 1145645 GCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGGTT 1145704 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 | || || ||||||| ||||||||| ||||| || ||||||||||| |||||||| Sbjct 1145705 CGCTGAGAA-GGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 1145763 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || || |||||||||||| || ||||| Sbjct 1145764 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 1145796 Score = 129 bits (142), Expect = 9e-24 Identities = 186/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| |||||||||||||| | || Sbjct 1145152 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAG 1145211 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG--CACCCG 794009 ||||| |||||| | ||| |||||||| | | |||| ||||||| || | Sbjct 1145212 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTGCCCAG 1145271 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||||| || || |||||||||||||| || |||||||| ||||||| ||||||| Sbjct 1145272 GGCGACG--AGGAGACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTC 1145329 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| | | ||||| | ||| || |||||| Sbjct 1145330 ATGCCGAGGAGGGCGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCA 1145389 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 1145390 TCAGTGATGATGT-CCTGG 1145407 >seq37 Length=4018383 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | ||||||||||| ||||||||||| || ||| | || ||||||||||| |||||| Sbjct 1987593 GCCTCTAACTACCTCGATATCAAGCCCCTTCTTGATGTTGGCTGCAAGACCGTCGCCAAC 1987534 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||| ||||| || ||||||| Sbjct 1987533 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACATTCAACATCA 1987485 Score = 104 bits (114), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| ||||| |||||| |||| || || ||| | | Sbjct 9672 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCACCGGGGAG 9613 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 9612 GATAAGGCGGACAGAGGTCTGGATCTCTCGGG 9581 Score = 102 bits (112), Expect = 1e-15 Identities = 324/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || |||| ||| ||||| || ||||| || || |||||||| Sbjct 714456 CTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGA 714397 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | ||| || | |||| || | || Sbjct 714396 GGTACCGTTGGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGTTCAGACC 714337 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| |||||| || | || || | || || || || || || ||||| Sbjct 714336 AATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 714277 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || ||| || || | | || || Sbjct 714276 AATACTGTCCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACC 714217 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||||||||||| ||||| | || ||| | ||| |||||| | ||| || Sbjct 714216 CGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 714157 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || ||| | | | || ||| |||| || ||||| || || Sbjct 714156 CTCGAGGACACGCTCAA-----TGTT----GTC-----ACCC-CAGATGCCGACAGCAAC 714112 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||||| |||||| ||||| || | | | | |||| |||||||| Sbjct 714111 ACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 714052 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || || ||| | ||||||||| ||| | ||| || || | | ||||| Sbjct 714051 TCGCTCAAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGTCATAGACAATGGC 713992 Query 2074020 GGCGTCGAGGGCCTCCTTGTG 2074040 || ||| || |||||||||| Sbjct 713991 GGAGTCTAGCTCCTCCTTGTG 713971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916235443420217