Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq37 257 2e-63
seq41 116 4e-21
seq32 116 4e-21
seq4 107 2e-18
>seq37
Length=4018383
Score = 257 bits (284), Expect = 2e-63
Identities = 995/1544 (64%), Gaps = 51/1544 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| |||||||| ||||| || || ||| | || | |||| || | ||
Sbjct 715508 TTAACGACCTGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGC 715449
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || |||||||||| |||| ||||||| || | || ||||||||| || | |
Sbjct 715448 TCGAAGCACTCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGC 715389
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
||||| |||||| ||| | | || | | | | |||| | |||||||||||
Sbjct 715388 AGCAGACTGTTGCGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAG 715329
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| || || ||||||||||||||||| |||| ||||| || || || |
Sbjct 715328 AGATCAGAGGGCTTCACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAG 715269
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA-GCTCGCCTCGAGCGC 148558
|||| | | | ||| || || | | || ||||| | ||| | || || ||
Sbjct 715268 CCCTTGAAGGTAGAGTAAGGACCCTCCTCCTTGGCCAGCT-GCACGGAAGCAGTCAGAGC 715210
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC---AGCGCCGC-CGACTCGCTTT 148614
| | ||| || ||||| || ||| |||| ||| | ||| | || | |
Sbjct 715209 AGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGAC----T 715154
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | ||||| ||||| | || || |||||||| ||||| || || |||||||| |
Sbjct 715153 CGAAAGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAG 715094
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733
| |||||| |||||| | ||| || || || | || |||||||| || |||
Sbjct 715093 GTCGGTGTCGCATGTTGCTGTTGCGAGC-TTCAGGAACGGGGTAGTGGTTCACATCAATG 715035
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAA 148787
||| ||| || ||||| || || || ||| | | ||||| || ||| |
Sbjct 715034 ATCCTGTTCAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATAG 714975
Query 148788 TCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCC 148847
| || ||||| |||| | | | ||||| |||||| || || || || ||
Sbjct 714974 CAGGCCTCGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCA 714915
Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTGATC 148904
|||||| ||||| | |||||| | |||||| | |||||| || ||||| || |
Sbjct 714914 ACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGT- 714856
Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964
|||| |||||| || |||||||||| |||||| |||||||| |||||| | ||
Sbjct 714855 --ACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 714798
Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022
||||| || ||| | || | ||| | | | || | ||| || |||
Sbjct 714797 TTACCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCA--GAGCTTCTGGGC-----CTT 714745
Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074
|| || | |||||||| ||| ||| || | ||| | ||| ||||||| |
Sbjct 714744 CATGGTC-TTGCGACCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGC--CTCGAACTC 714688
Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134
||| |||||||| ||| |||||||||| |||| || || ||||| || | ||| | ||
Sbjct 714687 CTCACCGTAGCAGTCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACC 714628
Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194
|| | | || |||||||| || |||||||| | |||||| || | | ||||||
Sbjct 714627 GTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCG 714568
Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254
|| | ||||| ||| ||| |||||||| || | || | || ||
Sbjct 714567 AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGC 714508
Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311
|||||| ||||||| ||| | || | || || ||| ||||| ||||| |||||
Sbjct 714507 GTGCCAGGGCTCAAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGAC 714448
Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371
|| || | ||||||| || || |||| |||||| || || ||| || |||||
Sbjct 714447 GTATCGGGCAGTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGAGGTACCGTT 714388
Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431
||| | ||| ||| || || | | ||||||||| | || || || ||
Sbjct 714387 GGTACCGGCGATGTAGGAGCCAGTGGCACGGATTCGGTGCACGTTCAGACCAATACCACC 714328
Query 149432 -GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490
||| | ||| || || || ||| ||| || || || ||||| || ||||
Sbjct 714327 AGCCAT-CTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATACTGT 714269
Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550
| ||||||| | || ||||| ||| | | || || | || || || ||
Sbjct 714268 CCTCCTTCATGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACCCGCATTGA 714209
Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609
| | ||||||| ||| || || || | || || | ||| | | ||| | ||||||
Sbjct 714208 AGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCG-ACATGAGGTTGTAAGTCTCGAGG 714150
Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669
|| || || |||| || || |||||| | || || ||||| | ||| ||||| ||
Sbjct 714149 ACACGCTCAATGTTGTCACCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGGGGG 714090
Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729
||||| | | ||| |||| ||||| | |||| || || |||||| |||||
Sbjct 714089 CGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCA 714030
Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
||||| | ||| | ||||| ||| | | | ||||||||| |||
Sbjct 714029 AAGTATTGGTATTGGAAGTCACGGTCATAGACAATGGCGGAGTC 713986
>seq41
Length=1307349
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| |||| || ||| | | | |||||||||||||| || ||
Sbjct 954362 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTACCAGCAA 954420
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| || || |||||||||||||| || ||||| |||||||| |||||| ||||| |
Sbjct 954421 AGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGT 954480
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||||| | |||||| || | ||||| || || || || || || || |
Sbjct 954481 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGA 954540
Query 133648 CGAAAATCTGCAT 133660
|||| ||||||||
Sbjct 954541 CGAAGATCTGCAT 954553
>seq32
Length=3227256
Score = 116 bits (128), Expect = 4e-21
Identities = 137/183 (75%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||||||||| ||||| || ||||||||| | ||| | | | ||||| ||||
Sbjct 1808092 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCA-TCCTCAAGCT 1808150
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| |||| || |||||||| || ||||||||||| |||||||| ||||
Sbjct 1808151 GCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCT 1808210
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | || || | || ||| || |||| ||||| ||| ||||| |
Sbjct 1808211 TCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCG 1808270
Query 133636 TCA 133638
|||
Sbjct 1808271 TCA 1808273
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535
||||||||| | ||| ||||| |||| || ||||||||||||||| |||||| |||
Sbjct 1324099 GGCTTCCACATCCACACTTTTGGTGACAACACCAACGGCTGCACCTCTGCCGGCCCTCAC 1324040
Query 116536 TTCAACCC-CACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGA 116594
|||||||| |||| | || |||||| || |||| || || | || ||||| || ||
Sbjct 1324039 TTCAACCCTCACCAG-AAGACCCACGGTGCTCCCACCGACGAGGCCCGCCACGTTGGCGA 1323981
Query 116595 CCTGGGCAACATTGAGGCC 116613
|| |||||||| ||| ||
Sbjct 1323980 TCTCGGCAACATCGAGACC 1323962
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/199 (71%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || ||||| || ||||| || | ||| ||| |||||| |||||||| |
Sbjct 1807431 GGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACC-GTCCTCCAGCTGCTTAC 1807489
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || |||||||||||||| ||||| || |||||||| ||||| ||
Sbjct 1807490 CAGCAAAGATAAGTCGCTGCTGGTCGGG-GGGATACCCTCCTTGTCCTGAATCTTGGACT 1807548
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| || ||| ||| ||| || || | |||| ||| || || || ||||
Sbjct 1807549 TCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAG 1807608
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 1807609 TCTTGACAAAGATCTGCAT 1807627
>seq4
Length=1115785
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || || |||||||| || || || ||||| ||||||
Sbjct 972087 TCCTCAAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTG 972146
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||||| | || ||| || |||| ||||| |
Sbjct 972147 TCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 972206
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 972207 GTCTTGCCCGTCAGGGTCTTCACGAAA 972233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420177595720
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