Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq54 188 1e-41 seq37 91.5 2e-12 seq57 89.7 7e-12 >seq54 Length=1261221 Score = 188 bits (208), Expect = 1e-41 Identities = 359/515 (70%), Gaps = 28/515 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||| ||||||||| | || | Sbjct 1146010 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATC 1145952 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | ||||||| ||| Sbjct 1145951 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACCTCTGACGAGCAGTTCTTC 1145896 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| |||| ||||| || ||||||| || |||||||| |||||| || | Sbjct 1145895 ATCTCTCACATCCTTGCCTTCTT-CGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGT 1145837 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | ||||| || | || ||||| || | || ||||| |||||||| Sbjct 1145836 TGAGCGATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 1145777 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || |||||||| || || || ||||||||| ||||||| Sbjct 1145776 CATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGA 1145717 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || || | ||| | ||||| |||||| || || | || | | | || | Sbjct 1145716 GCC-TTCTCAGCGAACCTATCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGA 1145658 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 ||||||||||||| || | |||||| ||||||| ||| | |||||| |||| Sbjct 1145657 AGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCG 1145603 Query 1456184 GCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATC 1456240 ||||| | ||| || | ||||||||| ||||| ||| | | || || || ||||| Sbjct 1145602 TCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCT--TCCATC 1145545 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||||||||| || |||||||||||||| Sbjct 1145544 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 1145510 Score = 107 bits (118), Expect = 3e-17 Identities = 178/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| || ||| | ||||| | | ||| | || || || Sbjct 1145400 ATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGGCTCTCCCCTGCGCC 1145341 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||||||| | |||||| |||||||| || || ||||||||||| | Sbjct 1145340 CTCCTCGGCATGAACGCCAAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGACCGTC 1145283 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| || || ||| || ||||| |||| | | |||||||| ||| | ||| Sbjct 1145282 TCCTCGTCGCCCTGGGCAACG-AGAAGGTCTACAAGTCTGCCAACCCCTTCGACTTCATG 1145224 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| || || || || ||| Sbjct 1145223 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 1145164 Query 1456762 AAGGCCGGCGTC 1456773 ||||| || ||| Sbjct 1145163 AAGGCTGGTGTC 1145152 >seq37 Length=4018383 Score = 91.5 bits (100), Expect = 2e-12 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | |||||| || | |||| |||| |||||| Sbjct 714755 AGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGTAACCCCTTCATGCTCTACA 714814 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAA 262209 |||| | ||||| | ||||||||| |||||||||| |||| || ||| |||| Sbjct 714815 AGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAGCT-CCAA 714872 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||||||||| |||||| || ||| Sbjct 714873 CCTGTGCACTGAGATCATCGAGT 714895 >seq57 Length=2357170 Score = 89.7 bits (98), Expect = 7e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 ||||| ||||| || || || |||| |||||||| | | |||| ||| ||||| Sbjct 698353 CGCAGAATGGCGCATCGTGATTGTAGGGGCTCGATGATCTTGTTCGACTGGTTACAGGCA 698294 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| || || ||||| |||| | | |||||||| ||||| || |||||||| Sbjct 698293 AAGGCGAATCGAGTCGTGTTGGAGTAAATCTCCATGGTTCGTCGGAGTGCTTGTTGGGCG 698234 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 ||| || | || ||| || ||||||||||||| | |||||| || ||| ||| || Sbjct 698233 CCCGAGGTCATGCTGTCAGCTTCGTCGAGGATGACCAGCTTGTGACGGCCGGCCGGTAG 698175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177801265460686