Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq54 188 1e-41
seq37 91.5 2e-12
seq57 89.7 7e-12
>seq54
Length=1261221
Score = 188 bits (208), Expect = 1e-41
Identities = 359/515 (70%), Gaps = 28/515 (5%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || |||||||||||||| || ||||| ||||||||| | || |
Sbjct 1146010 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATC 1145952
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| ||| | ||||||| |||
Sbjct 1145951 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACCTCTGACGAGCAGTTCTTC 1145896
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| |||| ||||| || ||||||| || |||||||| |||||| || |
Sbjct 1145895 ATCTCTCACATCCTTGCCTTCTT-CGCCGCCTCTGACGGCATCGTCAACGAGAATCTTGT 1145837
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| || || | ||||| || | || ||||| || | || ||||| ||||||||
Sbjct 1145836 TGAGCGATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 1145777
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || |||||||| || || || ||||||||| |||||||
Sbjct 1145776 CATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGA 1145717
Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126
|| || | ||| | ||||| |||||| || || | || | | | || |
Sbjct 1145716 GCC-TTCTCAGCGAACCTATCTCTTCAACGCCATTGAGACCATCCCTTGCATCCGCAAGA 1145658
Query 1456127 AGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183
||||||||||||| || | |||||| ||||||| ||| | |||||| ||||
Sbjct 1145657 AGGCCGACTGGGCTATCAGATGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCG 1145603
Query 1456184 GCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATC 1456240
||||| | ||| || | ||||||||| ||||| ||| | | || || || |||||
Sbjct 1145602 TCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCT--TCCATC 1145545
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| |||||||||||||| || ||||||||||||||
Sbjct 1145544 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 1145510
Score = 107 bits (118), Expect = 3e-17
Identities = 178/252 (71%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| || |||||| || ||| | ||||| | | ||| | || || ||
Sbjct 1145400 ATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGGCTCTCCCCTGCGCC 1145341
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
||| ||||||||||||||| | |||||| |||||||| || || ||||||||||| |
Sbjct 1145340 CTCCTCGGCATGAACGCCAAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGACCGTC 1145283
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| |||| || || ||| || ||||| |||| | | |||||||| ||| | |||
Sbjct 1145282 TCCTCGTCGCCCTGGGCAACG-AGAAGGTCTACAAGTCTGCCAACCCCTTCGACTTCATG 1145224
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| |||||| || || || || |||
Sbjct 1145223 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 1145164
Query 1456762 AAGGCCGGCGTC 1456773
||||| || |||
Sbjct 1145163 AAGGCTGGTGTC 1145152
>seq37
Length=4018383
Score = 91.5 bits (100), Expect = 2e-12
Identities = 108/143 (76%), Gaps = 4/143 (3%)
Strand=Plus/Plus
Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151
|| |||||| ||||| ||| ||| || | |||||| || | |||| |||| ||||||
Sbjct 714755 AGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGTAACCCCTTCATGCTCTACA 714814
Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAA 262209
|||| | ||||| | ||||||||| |||||||||| |||| || ||| ||||
Sbjct 714815 AGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATTCG-CAGCT-CCAA 714872
Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232
||||||||| |||||| || |||
Sbjct 714873 CCTGTGCACTGAGATCATCGAGT 714895
>seq57
Length=2357170
Score = 89.7 bits (98), Expect = 7e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
||||| ||||| || || || |||| |||||||| | | |||| ||| |||||
Sbjct 698353 CGCAGAATGGCGCATCGTGATTGTAGGGGCTCGATGATCTTGTTCGACTGGTTACAGGCA 698294
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
| ||| || || ||||| |||| | | |||||||| ||||| || ||||||||
Sbjct 698293 AAGGCGAATCGAGTCGTGTTGGAGTAAATCTCCATGGTTCGTCGGAGTGCTTGTTGGGCG 698234
Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054
||| || | || ||| || ||||||||||||| | |||||| || ||| ||| ||
Sbjct 698233 CCCGAGGTCATGCTGTCAGCTTCGTCGAGGATGACCAGCTTGTGACGGCCGGCCGGTAG 698175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177801265460686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |