Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq32 113 5e-20 seq41 109 6e-19 >seq32 Length=3227256 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || ||||||||||||| | || | ||| ||| Sbjct 1807647 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCG 1807706 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || || || | ||||| || || || || || ||||| || || ||| Sbjct 1807707 AGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGA 1807766 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG-AGAGTAATGGTT-T 134682 || || || || || | |||||||||||||||||| ||| || || |||||| | Sbjct 1807767 ATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGTTCT 1807826 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || | ||| || ||||| |||||||| Sbjct 1807827 TTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||| ||||| || |||||||| ||| | Sbjct 1808069 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAA 1808128 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || ||||||| ||||||||||| || || Sbjct 1808129 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGG 1808188 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | || || || || || || Sbjct 1808189 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 1808248 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || || || Sbjct 1808249 TCGAGGGTGATGGTCTTGCCCGT 1808271 Score = 100 bits (110), Expect = 3e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || |||||||| |||||||||||||| Sbjct 1807402 CCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAG 1807461 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || ||||| || || ||||| || | |||||||| ||||| || Sbjct 1807462 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGG-GGG 1807520 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | || ||| || || || Sbjct 1807521 ATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGACC 1807580 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | ||| || || || || ||||| Sbjct 1807581 TCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 >seq41 Length=1307349 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| ||||| || ||||||||||||| | |||| | || ||| Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | |||||||| ||||| || ||||| || || || || Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || ||||| || || || || || || Sbjct 954465 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTC 954524 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | || || ||||| || ||||| ||| Sbjct 954525 CCCGTAAGGGTCTTGACGAAGATCTGCATCTTG 954557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397749299560