Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq54 113 6e-20 >seq54 Length=1261221 Score = 113 bits (124), Expect = 6e-20 Identities = 363/560 (65%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| | | || | ||||| || || || || Sbjct 1145452 GCAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 1145511 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||||||||| |||||||| || |||| |||||| | ||| ||||| Sbjct 1145512 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAA 1145571 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG 39792 ||| || || || || || || ||||| || | || | | | || || || Sbjct 1145572 GATACCCTCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGAAGAGTCCTTGTCCTG 1145631 Query 39793 TATCCACTTCTG--TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| |||| ||||| || || ||||| | ||||| || || || || || Sbjct 1145632 GATCCA--TCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCG 1145689 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 || |||||||| | | | | || || | || || || || | ||| || Sbjct 1145690 TTGAAGAGATAGGTTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAG 1145749 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || |||||||| || ||| ||||| || ||||| || |||| || || | Sbjct 1145750 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGG 1145809 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 || || ||||| | |||| || | | ||| || || || || || ||| ||| Sbjct 1145810 ATCTGAACCTCGCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCG 1145869 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTC 40087 || || || || | | || || || | | || || | |||| || ||| Sbjct 1145870 GCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTC 1145929 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 ||||| | || ||| || || | ||| | || || || ||||| || || ||||| ||| Sbjct 1145930 CAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCC 1145989 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 1145990 TTCTTGTACATCTGCCAGAT 1146009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907915604920