Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq54 102 3e-16
seq37 95.1 4e-14
>seq54
Length=1261221
Score = 102 bits (112), Expect = 3e-16
Identities = 354/536 (66%), Gaps = 21/536 (4%)
Strand=Plus/Minus
Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408
|||||||||||||| |||||||| | ||| |||||| | || || | | |||
Sbjct 1145964 GAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCCTGAC---CTCTGA- 1145909
Query 443409 CGCG-ATTTCTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGG 443464
|| | | ||||||| | |||| | |||||||| || | ||||| ||||||
Sbjct 1145908 CGAGCAGTTCTTCATCTCTCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAA 1145849
Query 443465 TGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTA 443524
|||||||| || ||| ||| || ||| | | ||||||| || | ||||||
Sbjct 1145848 CGAGAATCTTGTTGAGCGATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTA 1145789
Query 443525 CGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGAC 443584
|| ||||| | ||||||||||| ||| ||||| |||| | | | || | ||
Sbjct 1145788 CGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACAC 1145729
Query 443585 ACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGTTCAT---GACCACGC 443640
||| || || || ||||| || |||| ||| || ||| ||||| |
Sbjct 1145728 -CTACATC--AAGGAGCCTTCTCAGCGAACCTATCTCTTCAACGC-CATTGAGACCATCC 1145673
Query 443641 CAGGCATCACTGAAAAGACTCGCTGGGCAAAACAG-TGGCTCGAACGAGAAAATCTCAGC 443699
| ||||| | ||| | |||||| | ||| ||| || | || || ||| |
Sbjct 1145672 CTTGCATCCGCAAGAAGGCCGACTGGGCTAT-CAGATGGATCCAG-GACAAGGACTCTTC 1145615
Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
|| | |||| || || || || |||| ||||| || | || || || || |||
Sbjct 1145614 CTTTGCTCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTT 1145555
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| || |||||||||||| | || |||||||| || |||| |||||||||||| ||||
Sbjct 1145554 T-GCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACG 1145496
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| || ||| ||| || |||||| | || |||||| ||||| || ||| || ||
Sbjct 1145495 AGCTCATCTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCC 1145440
>seq37
Length=4018383
Score = 95.1 bits (104), Expect = 4e-14
Identities = 220/325 (68%), Gaps = 20/325 (6%)
Strand=Plus/Plus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | ||||| ||||||||| || || ||||||||||| || ||| ||| ||
Sbjct 714412 CCTATGCTTCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGGTGGCAACAAGCGA 714471
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095
|| || || || |||||||||| ||||| |||||||| || | |||| ||| ||
Sbjct 714472 CCTGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 714528
Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| ||| | | || ||||| || ||| | ||| |||||| | | | |||
Sbjct 714529 GAC--CTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGACTTGTTCCTGGCTC 714586
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GACCTGGAGCCT 255210
||||| |||||| || || || ||||| ||||| || || ||||| ||
Sbjct 714587 TCTGGATTCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACGGTGA-CTGGACTCT 714641
Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACT 255270
|||||||||||| | |||||||| | ||||| | ||||| ||||| || ||
Sbjct 714642 GATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTGCTACGGTGAGGAGTTCGAGGCTCT 714701
Query 255271 GTATCTGGAGTACGAGCGTGCCGGC 255295
||| | |||| ||| ||||||
Sbjct 714702 GTACGAGAAGTATGAGAAGGCCGGC 714726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588333903892835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |