Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq54 102 3e-16 seq37 95.1 4e-14 >seq54 Length=1261221 Score = 102 bits (112), Expect = 3e-16 Identities = 354/536 (66%), Gaps = 21/536 (4%) Strand=Plus/Minus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 |||||||||||||| |||||||| | ||| |||||| | || || | | ||| Sbjct 1145964 GAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCCTGAC---CTCTGA- 1145909 Query 443409 CGCG-ATTTCTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGG 443464 || | | ||||||| | |||| | |||||||| || | ||||| |||||| Sbjct 1145908 CGAGCAGTTCTTCATCTCTCACATCCTTGCCTTCTTCGCCGCCTCTGACGGCATCGTCAA 1145849 Query 443465 TGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTA 443524 |||||||| || ||| ||| || ||| | | ||||||| || | |||||| Sbjct 1145848 CGAGAATCTTGTTGAGCGATTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTA 1145789 Query 443525 CGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGAC 443584 || ||||| | ||||||||||| ||| ||||| |||| | | | || | || Sbjct 1145788 CGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACAC 1145729 Query 443585 ACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGTTCAT---GACCACGC 443640 ||| || || || ||||| || |||| ||| || ||| ||||| | Sbjct 1145728 -CTACATC--AAGGAGCCTTCTCAGCGAACCTATCTCTTCAACGC-CATTGAGACCATCC 1145673 Query 443641 CAGGCATCACTGAAAAGACTCGCTGGGCAAAACAG-TGGCTCGAACGAGAAAATCTCAGC 443699 | ||||| | ||| | |||||| | ||| ||| || | || || ||| | Sbjct 1145672 CTTGCATCCGCAAGAAGGCCGACTGGGCTAT-CAGATGGATCCAG-GACAAGGACTCTTC 1145615 Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 || | |||| || || || || |||| ||||| || | || || || || ||| Sbjct 1145614 CTTTGCTCAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTGCCTT 1145555 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || |||||||||||| | || |||||||| || |||| |||||||||||| |||| Sbjct 1145554 T-GCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACG 1145496 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| ||| || |||||| | || |||||| ||||| || ||| || || Sbjct 1145495 AGCTCATCTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCC 1145440 >seq37 Length=4018383 Score = 95.1 bits (104), Expect = 4e-14 Identities = 220/325 (68%), Gaps = 20/325 (6%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||| ||||||||| || || ||||||||||| || ||| ||| || Sbjct 714412 CCTATGCTTCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGGTGGCAACAAGCGA 714471 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095 || || || || |||||||||| ||||| |||||||| || | |||| ||| || Sbjct 714472 CCTGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 714528 Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || ||| | | || ||||| || ||| | ||| |||||| | | | ||| Sbjct 714529 GAC--CTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGACTTGTTCCTGGCTC 714586 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GACCTGGAGCCT 255210 ||||| |||||| || || || ||||| ||||| || || ||||| || Sbjct 714587 TCTGGATTCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACGGTGA-CTGGACTCT 714641 Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACT 255270 |||||||||||| | |||||||| | ||||| | ||||| ||||| || || Sbjct 714642 GATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTGCTACGGTGAGGAGTTCGAGGCTCT 714701 Query 255271 GTATCTGGAGTACGAGCGTGCCGGC 255295 ||| | |||| ||| |||||| Sbjct 714702 GTACGAGAAGTATGAGAAGGCCGGC 714726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333903892835