Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq37 279 6e-70 seq54 96.9 4e-15 seq57 84.2 3e-11 seq30 84.2 3e-11 >seq37 Length=4018383 Score = 279 bits (308), Expect = 6e-70 Identities = 978/1495 (65%), Gaps = 49/1495 (3%) Strand=Plus/Minus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 ||||| || |||||| | | | |||||||||| | ||||| || || ||||| || Sbjct 715496 AACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCG 715437 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || ||||||| ||| || | ||| ||| || ||||| || || | || |||||||| Sbjct 715436 TTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTG 715377 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GG 110858 || ||| | |||||||| | ||| ||||| |||||||| || || | || Sbjct 715376 CGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAGA-GATCAGAGGG 715318 Query 110859 TTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGG 110918 ||||| |||| ||||||| ||||| || | || | || || ||||| |||| |||| Sbjct 715317 CTTCACGTTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAAGG 715259 Query 110919 TTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATAC 110977 | || | ||| | | | |||| | ||| | || ||| | || || || Sbjct 715258 TAGAGTAAGGACCCTCCTCCTTGGCCAGCTGCACGGAA-GCAGTCAGAGCAGCATGGTAG 715200 Query 110978 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCG 111036 ||||| |||||||| | |||| ||| || ||| || || ||| || | ||| Sbjct 715199 ATGGTCTCAAAGATCTGCTTGTTCAGCTCTCGAGCCTCAGGAGACTCGAAAGGCAT-GCG 715141 Query 111037 GCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCA 111095 || | || || |||| || ||||| || ||||| | |||||||||| |||||||| Sbjct 715140 -CAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTGTCGCA 715082 Query 111096 TATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTA 111152 | || || | ||| || ||| ||||| || || ||||||| | ||| | Sbjct 715081 TGTTG--CTGTTGCG-AGCTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTTCA 715025 Query 111153 GATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 | || ||| ||| ||||| || || || || | | ||| | || | || Sbjct 715024 GGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATA---GCAGGCCT 714968 Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | |||| ||| | |||||||||| || || | || || ||||| ||||| Sbjct 714967 CGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTCAT 714908 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||| | || || || || | |||||| || ||| || |||| | Sbjct 714907 CAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAGGT 714848 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||| ||||| ||||| |||||| |||||||||||||||| |||| | || |||| Sbjct 714847 TCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCT 714788 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG-- 111446 | ||||| | | ||| || || | ||| | | || | | || |||| ||| Sbjct 714787 CGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTC----ATGGTCTTGCGA 714732 Query 111447 CCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCG 111505 ||| | || || ||| ||||| ||| || || || ||||||||||| |||| Sbjct 714731 CCCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCG 714672 Query 111506 GAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGC 111565 | |||||| || || || ||||| | |||| ||| | ||| | ||| || ||| Sbjct 714671 GCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGC 714612 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTT 111623 |||||||| || || |||||||| || | | ||| | || || | | || |||||| Sbjct 714611 TTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACA-AG-TCGCGAGCGCGGACCTCTT 714554 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | || ||||| || | ||||||||||| | || ||| |||||||| ||||||| Sbjct 714553 CCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAA 714494 Query 111684 GATAGACTGCGATAGATCCCTTTCGACGC---CCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| || | || || ||| ||| | |||| || || || || ||| Sbjct 714493 GGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCAGTGT 714434 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC-CGAA-T 111798 ||| || || |||||||| || ||| ||| | || ||| || || || ||| | Sbjct 714433 TGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCGATGT 714374 Query 111799 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 | ||| | |||| | | || | || || |||||||| |||||| ||| || Sbjct 714373 AGGAGCC--AGTGGCACGGATTCGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGA 714316 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 || ||||| | | ||||| |||| ||||| | || ||||||||| || | Sbjct 714315 AATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCATGTC 714256 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 || ||||||||| ||| | ||| || || ||||| |||||||||||||| || | Sbjct 714255 GACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGGGGGA 714196 Query 111979 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 || || ||| | | |||| ||||| || ||| ||||| | |||| |||||| Sbjct 714195 GGCATGGGTGA--AGAACTTGCTCGACATGAGGTTGTAAGTCTCGAGGACACGCTCAATG 714138 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGG 112096 | || || |||||||| || || ||||||| ||||| ||| ||| || | | Sbjct 714137 TTGTCACCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAACAATC 714078 Query 112097 ATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||||||| | | |||| || ||| |||||| || |||| |||||||| Sbjct 714077 TTGCCATCAATC--TTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTA 714025 >seq54 Length=1261221 Score = 96.9 bits (106), Expect = 4e-15 Identities = 526/820 (64%), Gaps = 31/820 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 1145168 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATG 1145227 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || | | | | || |||| | ||||| Sbjct 1145228 AAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTG----CCCAGGGCGAC-GAGGA 1145282 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 |||| || | || |||| ||||||| ||| | | |||||| |||| |||| Sbjct 1145283 GACGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGGAGGG 1145342 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 || ||||| || || | |||| | | |||||| || || || | | |||| Sbjct 1145343 CGCAGGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGT 1145402 Query 122606 CGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | | | || ||| || ||||| Sbjct 1145403 CCTGGATGATCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCAA 1145459 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| ||||||||||| || || || || || || |||||| ||||| |||| Sbjct 1145460 AGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 1145519 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||||| |||||||| | ||| | || | ||| || | || ||||||||||||| Sbjct 1145520 TGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCACTGAAGAAGATACCC 1145578 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCA 122840 || || || || |||| || || | || ||||| ||| | ||| | | | ||| Sbjct 1145579 TCGACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCA 1145637 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAATA 122899 | | || ||||| | |||||||| || || || | || | ||||| || || Sbjct 1145638 TCTGATAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAG 1145697 Query 122900 ACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959 | | ||| | ||| ||||| ||||| ||||||| | || || || ||| Sbjct 1145698 ATAGGTTC-GCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGG 1145756 Query 122960 CATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 || | | | ||| ||| | || | ||||||| | || || ||| |||||| Sbjct 1145757 AGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGATCTGA 1145815 Query 123019 ACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077 ||||| |||| ||| | | | | |||||| || || || || || | || || Sbjct 1145816 ACCTC-GCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCGAA 1145874 Query 123078 GAATGCCAGGATGT---ACTTTATGAATTTCTTTTCA-TTTTCATTCAGGGTCTTCCAGT 123133 ||| || ||||||| | | | ||| | || ||| ||| | || | ||||||| Sbjct 1145875 GAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGC-GGTTGTTCCAGT 1145933 Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||| ||||| ||||||| ||||| || || |||||||| Sbjct 1145934 CGTGGAGATCCTTGGACAGATCAATCTCCTCGGCAGTCCA 1145973 >seq57 Length=2357170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || || |||||||||||||||| || || || || | |||| | | || ||| Sbjct 875207 GCGTCGATCTCATCAATGAAGATGATGCAAGGAGCGTTCTTGCGGCCTTCGGCGAACAGA 875148 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || || || | | ||| ||||| ||||||||||| || || | | | || | | Sbjct 875147 TCTCGCACACGAGAAGGACCAACACCCACAAACATCTCGACGAATTCAGAACCGCTCA-C 875089 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 |||| | ||| ||||| || || || || |||| |||||| || ||||| |||| Sbjct 875088 ACTGAA-GAAGGGGACTCCAGACTCGCCAGCCGTGGCCTTGGCGAGCAGTGTCTTACCCG 875030 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC-CAAAAT 11864 |||| || || || |||| || |||||||||||||||||||| |||| | || | Sbjct 875029 TACCAGGGGGGCCAGCCAGAATTGCTCCTCGGGGGATCTTGGCACCGAGCTTCTCGAACT 874970 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||||| ||||| | || ||||| ||| Sbjct 874969 ---TCTCGGGCTGCTTCAAGAAGCTCACAAACTC 874939 >seq30 Length=3684817 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 181811 ACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGA 181870 |||||| ||| || | ||| || | |||| |||||| || ||| ||||||||||| Sbjct 2173990 ACCACCGGCGAGTCGAGAACCGAAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTTGA 2174049 Query 181871 ACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTG 181930 || | ||| | ||||| || |||||| | || ||| | ||||||||||| Sbjct 2174050 TCCCACAAAGTTCTGGGCCAGGCCAATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTG 2174109 Query 181931 GTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTG-- 181988 ||| |||| || || | ||||| | ||||| | | |||||| | ||| ||| Sbjct 2174110 GTATGCTGTCTGTTCAGACACATAACCAGCCAATTCCACGACCTTC---TTATCCTTGAC 2174166 Query 181989 -AGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 ||||| | | ||||||||| || | ||| || | ||| ||||||| ||||||| Sbjct 2174167 CAGGTTTCTCTTGAAGCAAGCGTAGAGCACCTTGCGCTGACCGGGCTTGAAACCATCC 2174224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031191408800