Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq37 226 4e-54 seq54 197 2e-45 >seq37 Length=4018383 Score = 226 bits (250), Expect = 4e-54 Identities = 1083/1696 (64%), Gaps = 69/1696 (4%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| || |||| | ||| ||||||||||| |||||||| || | Sbjct 715846 TGAACTGAATGGGAGCAGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGAC 715787 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| | | ||||| || | |||| | ||| || | |||| Sbjct 715786 CGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATGT 715727 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | | ||||| ||||| |||||| || || || || ||||| | | | Sbjct 715726 GGATGTTGAGAGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCTGCCATCTGGACGA 715667 Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 | || || | || |||||||| ||| ||||||| ||| | ||| | |||| Sbjct 715666 C---CTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTGACCTCAGCGGGGA 715610 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCAT---AT 118095 | | ||| || |||||||| ||| || | |||| | | |||||| || Sbjct 715609 TGTTGGGGATGTTCTGGATGGA---ACCGTTCTCAGCAATGATTCGGTTCTTCATGGAAT 715553 Query 118096 CCTTTGACCAGAGACCAATCTTTTTGAGATCCT----CCACGAGATGCTTATTGACAACA 118151 || ||||| || || || | |||||||| | || || | || || || Sbjct 715552 CC---GACCACAGGCCCATATCGACGAGATCCTTGAGCAACCAGGGG----TTAACGACC 715500 Query 118152 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCAC 118211 ||||| || |||||| || | | | ||||| |||| ||||| ||||| |||||| Sbjct 715499 TGGAACTCGCCAGCGAGGACACGACGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCAC 715440 Query 118212 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 118271 || |||||||||| ||| || | ||| ||| ||||||||||| || | || || ||| Sbjct 715439 TCGTTGTTACCCAGGATCTGCGAAGTGCTGGCAGTGGGCATGGGGGCAAGCAGCAGACTG 715380 Query 118272 TTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGC-TT 118330 || ||| ||| | ||| | | | ||| |||||| |||||||| || || | Sbjct 715379 TTGCGGGTACCATGCTCCTTGACCTGCTCCCTGAGAGACTCCCAGTCCCAG-AGATCAGA 715321 Query 118331 TGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 | || | | | |||||| || |||||||| ||||| | || || || || |||| || Sbjct 715320 GGGCTTCACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAA 715261 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTG 118447 || || || ||||| ||| |||| | |||| || || || || || Sbjct 715260 GGTAGAGTAAGGACCCTCCTCCTTGGCCAGCTGCACGGA---AGCAGTCAGAGCAGCATG 715204 Query 118448 ATACATTGTTTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCG 118505 || || || ||||| || | |||| || || | ||||| || || || | | Sbjct 715203 GTAGATGGTCTCAAAGATCTGCTTGTTCA--GCTCTCGAGCCTCAGGAGACTCGAAAG-G 715147 Query 118506 AGTCGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 118564 | ||| | || || |||| || ||||| |||||||||| |||||| || || || Sbjct 715146 CATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGGACACCGACGCCAATAGGTCGGTG 715087 Query 118565 TCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 118624 || ||| || || ||||| ||||| || ||| ||| || | ||| || Sbjct 715086 TCGCATGTTGCTGTTGCGAGCTTCAGGAACGGGGTAGTGGTTCACATCAATGATCCTGTT 715027 Query 118625 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 118684 || || |||| || ||||| || || ||||| | | | ||| | || | Sbjct 715026 CAGGTTGCGAACGACAGTCTGTGTGACCTCGTGCAGCTTCTGGAAGTCATA---GCAGGC 714970 Query 118685 CTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 118741 ||| ||| |||| | |||||||||| || || || ||||| |||| ||| Sbjct 714969 CTCGTCATAGTTGATGAAAGAGGGAAGGGCGAGAGAGGCAAGGTTACAGACAGCAACCTC 714910 Query 118742 ATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAA 118801 ||| || |||||| || || || ||||||| ||| || || |||||| |||| Sbjct 714909 ATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAG 714850 Query 118802 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGT 118861 |||||| || || ||| ||| || ||||||||| |||||| | || | || || Sbjct 714849 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGT 714790 Query 118862 CTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTG- 118919 ||| || || | || ||| || || | ||||| | || | || || ||| ||| Sbjct 714789 CTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGC 714734 Query 118920 ---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCC 118976 || ||| ||| ||| ||||| ||| || || || ||||| ||||| | Sbjct 714733 GACCCTTGCCGGCCTT-CTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAG 714675 Query 118977 TCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACC 119036 || | ||| || || || | || || | |||| ||| | ||| || ||| || Sbjct 714674 TCGGCGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACA 714615 Query 119037 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 119096 |||||||||||||| || || |||||||| ||| ||| | || ||| ||| | ||| Sbjct 714614 CGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAAGTCGCGAGCGCGGACCTCT 714555 Query 119097 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 119156 || | || || || |||| || | || || | || ||| |||||||| || || Sbjct 714554 TCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCA 714495 Query 119157 AGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCA 119210 ||||| | || | | || | | || ||| |||| | || || | ||| Sbjct 714494 AGGTAGATGGCAAAAGCACC---AGGTCGCTTGTTGCCACCCTGATCGACGTATCGGGCA 714438 Query 119211 GTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCG 119269 ||| ||| || ||||||||||| || | | ||| | ||| || || || || || Sbjct 714437 GTGTTGTTGAAGACACGAAGCATAGGGGTAACACCGTTGGAGGTACCGTTGGTACCGGCG 714378 Query 119270 A-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 119328 | || ||| | | |||| | || ||| | || || ||||||||| || ||| || Sbjct 714377 ATGTAGGAGCC--AGTGGCACGGATTCGGTGCACGTTCAGACCAATACCACCAGCCATCT 714320 Query 119329 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 119388 | || || || || | ||||| | | || || || || || ||| |||| Sbjct 714319 TGGAAATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATACTGTCCTCCTTCA 714260 Query 119389 TTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTG 119448 | ||| |||||||| || | |||||| ||| ||||| || |||||||| || | Sbjct 714259 TGTCGACAAGGAAGCATGAGGAGAGCTGAGGCTGGGGAGTACCCGCATTGAAGAGGGTGG 714200 Query 119449 GTGTCGCGTGGATGAA 119464 | | || ||| |||| Sbjct 714199 GGGAGGCATGGGTGAA 714184 >seq54 Length=1261221 Score = 197 bits (218), Expect = 2e-45 Identities = 540/813 (66%), Gaps = 17/813 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || ||| | ||| |||||||| Sbjct 1145168 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATG 1145227 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || | | | || | ||| | ||||||||| Sbjct 1145228 AAGTCGAAGGGGTTGGCAGACTTGTAGACCTTCTCGTTGCCCAGGGCGAC-GAGGAGACG 1145286 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| | || |||||| |||| |||| || Sbjct 1145287 GTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGGAGGGCGCA 1145346 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| ||||||| || || || | |||| | || Sbjct 1145347 GGGGAGAGCCTCAGTCAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTG 1145406 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 ||| ||| | ||| || | | ||| | | | || ||| || |||||| || Sbjct 1145407 GATGATCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCAAAGTC 1145463 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 1145464 GGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 1145523 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | | ||| | ||| ||||||||| ||||| || Sbjct 1145524 ACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCACTGAAGAAGATACCCTCGAC 1145583 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 ||||| |||| |||||||| ||||||||| | | | |||| | | ||| | | Sbjct 1145584 GGCAGCGAAGGCAACGAGACGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCATCTGA 1145642 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || |||| ||||| || || | ||||| | Sbjct 1145643 TAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTCTCAATGGCGTTGAAGAGATAGG 1145702 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | | || || || |||||||| | || ||||| || || || ||| |||| Sbjct 1145703 TTCGCTGAGAAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGA 1145762 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 1145763 TGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC- 1145820 Query 130382 TCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | || ||| | | | | |||||| || || || || || | || || || || Sbjct 1145821 GCCGCTGAATCGCTCAACAAGATTCTCGTTGACGATGCCGTCAGAGGCGGCGAAGAAGGC 1145880 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 ||||| | ||||| ||| || | | ||| || | |||||||||| || Sbjct 1145881 AAGGATGTGAGAGATGAAGAACTGCTCGTCAGAGGTCAGGCGGTTGTTCCAGTCGTGGAG 1145940 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| || ||||| | |||||| |||||||| Sbjct 1145941 ATCCTTGGACAGATCAATCTCCTCGGCAGTCCA 1145973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434403764680