Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq28 132 1e-25
seq32 129 2e-24
seq41 91.5 4e-13
>seq28
Length=4887614
Score = 132 bits (146), Expect = 1e-25
Identities = 437/675 (65%), Gaps = 12/675 (2%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || || | ||| | || |||||
Sbjct 2273118 GACATTATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 2273059
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| |||| |||||| | || || || || | ||| || || | || ||
Sbjct 2273058 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTTGCCATGAACCCCCAGAACACT 2272999
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437
|| || ||||| ||||| | || ||| | | || | ||| | || || |
Sbjct 2272998 GTCTTCGATGCCAAGCGTTTGATCGGTCGCAAGTTCGCCGACCCTGAGGTC----CAGGC 2272943
Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497
|| | || || || || || | | | || | ||| |||| || || || || ||
Sbjct 2272942 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCTATCATCGA 2272886
Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557
|||||| | || || || || || || ||||| || || || || ||||| |
Sbjct 2272885 GGTTGAGTTCAAGGGCGAGCAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCT 2272826
Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617
|| ||| || | || || | || | ||||| || || | | ||||| |
Sbjct 2272825 TACCAAGATGCGAGAGACCGCCGAGTCTTACCTCGGTGAGACCGTCAACAACGCTGTCGT 2272766
Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677
|| || || ||||| || || || | |||||| || || || ||||| || |||
Sbjct 2272765 CACCGTTCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTCAT 2272706
Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737
||| || | || ||||| |||| || || || || || || || || ||||| || ||
Sbjct 2272705 TGCTGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCCGCTGCCATTGCCTACGG 2272646
Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797
|| || || | || || || || | || || || ||| | |||||||||||
Sbjct 2272645 TCTCGACAAGAAGATCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTAC 2272586
Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857
|| ||||| || || || || |||| ||||| || || || || || | ||||| ||
Sbjct 2272585 CTTCGATGTTTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGG 2272526
Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917
||| || || | ||||| || ||||| || || ||||| || || || || || ||
Sbjct 2272525 TGACACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTCGTCAACGA 2272466
Query 349918 ATTTAAGCGTCAAGC 349932
|| ||||| |||||
Sbjct 2272465 GTTCAAGCG-CAAGC 2272452
Score = 113 bits (124), Expect = 1e-19
Identities = 172/245 (70%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 378202 TCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCA 378261
||||| | || || | |||||||| ||||||||| || | ||| || || |||
Sbjct 1877576 TCTTCCAGGGCCTTGACCAGTCGTCGCTGAATATAACCTGTCTCGGCAGTCTTGACCGCA 1877517
Query 378262 GTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGT 378321
|||||||| | ||| | |||||| |||| || |||||||| || || | |||||| ||
Sbjct 1877516 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGGAAGGAGTCAGA 1877457
Query 378322 CCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTA 378381
|||| || | || |||| | || || | || | ||||| | ||||| || ||
Sbjct 1877456 CCACGAAGGTACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCATCCTTGGTG 1877397
Query 378382 TAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGT 378441
|||| || | ||| |||| || ||| || | ||||| || ||||| || ||| ||||
Sbjct 1877396 AAATGGGGCAGTGTGCGATACTTAAATCCGAAGGGAATACGCTTTCCTTCGACAATCTGC 1877337
Query 378442 TGACC 378446
|||||
Sbjct 1877336 TGACC 1877332
Score = 89.7 bits (98), Expect = 2e-12
Identities = 100/133 (75%), Gaps = 3/133 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| |||||||| | || || ||| || || | |||||||| || ||||| || ||
Sbjct 1878338 CGGGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAACGTGTTC 1878282
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||||| ||||||||||| ||||| || || | ||| |||||||||||
Sbjct 1878281 AGTGTCATCTGAGTAGCAGGCTCACCAATGGACTGAGCAGCCAAAACACCAACCATTTCA 1878222
Query 377578 CCAGGATTGACAA 377590
||||| ||||||
Sbjct 1878221 CCAGGGCTGACAA 1878209
>seq32
Length=3227256
Score = 129 bits (142), Expect = 2e-24
Identities = 170/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| || || ||||||||||| || || || || || ||
Sbjct 1807625 CATACCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 1807684
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| ||||| || || || ||||| || || || ||||| || || || || |||||
Sbjct 1807685 GCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGG 1807744
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||||||||| ||||||||||| || | || || ||||| || | || || | |||
Sbjct 1807745 AGGAATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTC 1807804
Query 140687 AACTTC-AAGTGTAACTG-TCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||| || | | ||||||| || || || || || || || |||||
Sbjct 1807805 CACCTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 120 bits (132), Expect = 9e-22
Identities = 170/235 (72%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||| || || || || || || ||||| || ||
Sbjct 1807395 TTACTGACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTA 1807454
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||||| | || || || || || || || || ||||||||||| || || ||||| ||
Sbjct 1807455 GTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 1807514
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|| || || || || || |||||||| || | || ||||||||||| | ||| | |||
Sbjct 1807515 -GGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATC-GCTGG 1807572
Query 140684 -TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | |||||||| || || || || ||||| ||||||||
Sbjct 1807573 ACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627
Score = 116 bits (128), Expect = 1e-20
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | || || ||||| || || ||||| || || || || |||||
Sbjct 1808065 CATGCCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 1808124
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || || || || || |||||||||||
Sbjct 1808125 GGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGG 1808184
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || ||||| || || | |||||| | ||
Sbjct 1808185 AGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTC 1808244
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || || || | ||||| || ||
Sbjct 1808245 AACCTCGAGGGTGATGGTCTTGCCCGT 1808271
>seq41
Length=1307349
Score = 91.5 bits (100), Expect = 4e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || ||||| ||| || || || || || ||
Sbjct 954326 ACCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 954385
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || ||||||||||| || || ||||| || || ||
Sbjct 954386 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGG 954445
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || || || || || | || || | || ||
Sbjct 954446 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 954505
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || || ||||||||
Sbjct 954506 CTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 954553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515252400337709
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |