Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq28 132 1e-25 seq32 129 2e-24 seq41 91.5 4e-13 >seq28 Length=4887614 Score = 132 bits (146), Expect = 1e-25 Identities = 437/675 (65%), Gaps = 12/675 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || || | ||| | || ||||| Sbjct 2273118 GACATTATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 2273059 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | ||| || || | || || Sbjct 2273058 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTTGCCATGAACCCCCAGAACACT 2272999 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || ||||| ||||| | || ||| | | || | ||| | || || | Sbjct 2272998 GTCTTCGATGCCAAGCGTTTGATCGGTCGCAAGTTCGCCGACCCTGAGGTC----CAGGC 2272943 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| |||| || || || || || Sbjct 2272942 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCTATCATCGA 2272886 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 |||||| | || || || || || || ||||| || || || || ||||| | Sbjct 2272885 GGTTGAGTTCAAGGGCGAGCAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCT 2272826 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | || || | || | ||||| || || | | ||||| | Sbjct 2272825 TACCAAGATGCGAGAGACCGCCGAGTCTTACCTCGGTGAGACCGTCAACAACGCTGTCGT 2272766 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || ||||| || || || | |||||| || || || ||||| || ||| Sbjct 2272765 CACCGTTCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTCAT 2272706 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || ||||| |||| || || || || || || || || ||||| || || Sbjct 2272705 TGCTGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCCGCTGCCATTGCCTACGG 2272646 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | || || || || | || || || ||| | ||||||||||| Sbjct 2272645 TCTCGACAAGAAGATCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTAC 2272586 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || |||| ||||| || || || || || | ||||| || Sbjct 2272585 CTTCGATGTTTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGG 2272526 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || ||||| || || ||||| || || || || || || Sbjct 2272525 TGACACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTCGTCAACGA 2272466 Query 349918 ATTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 2272465 GTTCAAGCG-CAAGC 2272452 Score = 113 bits (124), Expect = 1e-19 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 378202 TCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCA 378261 ||||| | || || | |||||||| ||||||||| || | ||| || || ||| Sbjct 1877576 TCTTCCAGGGCCTTGACCAGTCGTCGCTGAATATAACCTGTCTCGGCAGTCTTGACCGCA 1877517 Query 378262 GTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGT 378321 |||||||| | ||| | |||||| |||| || |||||||| || || | |||||| || Sbjct 1877516 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGGAAGGAGTCAGA 1877457 Query 378322 CCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTA 378381 |||| || | || |||| | || || | || | ||||| | ||||| || || Sbjct 1877456 CCACGAAGGTACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCATCCTTGGTG 1877397 Query 378382 TAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGT 378441 |||| || | ||| |||| || ||| || | ||||| || ||||| || ||| |||| Sbjct 1877396 AAATGGGGCAGTGTGCGATACTTAAATCCGAAGGGAATACGCTTTCCTTCGACAATCTGC 1877337 Query 378442 TGACC 378446 ||||| Sbjct 1877336 TGACC 1877332 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || ||||| || || Sbjct 1878338 CGGGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAACGTGTTC 1878282 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| ||||| || || | ||| ||||||||||| Sbjct 1878281 AGTGTCATCTGAGTAGCAGGCTCACCAATGGACTGAGCAGCCAAAACACCAACCATTTCA 1878222 Query 377578 CCAGGATTGACAA 377590 ||||| |||||| Sbjct 1878221 CCAGGGCTGACAA 1878209 >seq32 Length=3227256 Score = 129 bits (142), Expect = 2e-24 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || ||||||||||| || || || || || || Sbjct 1807625 CATACCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 1807684 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || ||||| || || || ||||| || || || || ||||| Sbjct 1807685 GCTGAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGG 1807744 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||||||| ||||||||||| || | || || ||||| || | || || | ||| Sbjct 1807745 AGGAATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTC 1807804 Query 140687 AACTTC-AAGTGTAACTG-TCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||| || | | ||||||| || || || || || || || ||||| Sbjct 1807805 CACCTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857 Score = 120 bits (132), Expect = 9e-22 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||| || || || || || || ||||| || || Sbjct 1807395 TTACTGACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTA 1807454 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||||| | || || || || || || || || ||||||||||| || || ||||| || Sbjct 1807455 GTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 1807514 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 || || || || || || |||||||| || | || ||||||||||| | ||| | ||| Sbjct 1807515 -GGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATC-GCTGG 1807572 Query 140684 -TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 1807573 ACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627 Score = 116 bits (128), Expect = 1e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 1808065 CATGCCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 1808124 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || || || || || || ||||||||||| Sbjct 1808125 GGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGG 1808184 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | |||||| | || Sbjct 1808185 AGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTC 1808244 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| || || Sbjct 1808245 AACCTCGAGGGTGATGGTCTTGCCCGT 1808271 >seq41 Length=1307349 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || ||||| ||| || || || || || || Sbjct 954326 ACCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 954385 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 954386 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGG 954445 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 954446 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 954505 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 954506 CTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 954553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252400337709