Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq37 253 2e-62 seq30 150 2e-31 >seq37 Length=4018383 Score = 253 bits (280), Expect = 2e-62 Identities = 517/758 (68%), Gaps = 24/758 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| |||||| || |||||||| ||||| ||| Sbjct 714104 TCATGCGTGTTGCTGTCGGCATCTGGGGTGACAACATTGAGCGTGTCCTCGAGACTTACA 714163 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || || ||| | || ||||| ||||| || |||| Sbjct 714164 ACCTCATGTCGAGC---AAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAATGCGGGTA 714220 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || |||||| | || |||||||| || | |||||||| ||| || || | Sbjct 714221 CTCCCCAGCCTCAGCTCTCCTCATGCTTCCTTGTCGACATGAAGGAGGACAGTATTGAGG 714280 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || || || || |||||| |||||| || |||||| | | |||||||| ||| Sbjct 714281 GTATTTATGATACTCTCAAGACCTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGTC 714340 Query 53430 TCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | || ||| | ||| ||||||| | ||| | ||| || || ||||| | | Sbjct 714341 TGAACGTGCACCGAA--TCCGTGCCACTGGCTCCTACATCGCCGGTACCAACGGTACCTC 714398 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || | |||||||| || |||||||||||||| ||||| |||||| | ||||| Sbjct 714399 CAACGGTGTTACCCCTATGCTTCGTGTCTTCAACAACACTGCCCGATACGTCGATCAGGG 714458 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || ||||||||||| ||||| |||||||| || | | Sbjct 714459 TGGCAACAAGCGACCTGGTGCTTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTT 714518 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || ||||| ||| || || | |||||| | ||| || ||| |||| Sbjct 714519 TGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGACTTGTT 714578 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| |||||||| || ||||||||| | || |||||| ||| || ||| Sbjct 714579 CCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGAC 714638 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACG 53786 |||||||| || |||||||| ||||| ||| | | || ||||||||||||||| | | Sbjct 714639 TCTGATGTGTCCCAACGAGTGTCCCGGTCTCGCCGACTG-CTACGGTGAGGAGTTCGAGG 714697 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG------AAGAAGGTCAAGGCGC 53840 |||| || ||| | || | ||||| |||| |||| | ||||| | Sbjct 714698 CTCTGTACGAGAAGTATG-AG---AAGGCCG--GCAAGGGTCGCAAGACCATGAAGGCCC 714751 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || ||| ||||| || | || | |||| || Sbjct 714752 AGAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGTAACCCCTTCATGCTCT 714811 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||| |||| |||||||||||||||||| Sbjct 714812 ACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 714849 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || ||||| | ||| || |||||||||||||| |||||| |||| || | || Sbjct 715681 GCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCTCTCAACATCCACATGAAGGACCCC 715740 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | ||||||||| ||| |||||| || || |||||||| Sbjct 715741 ACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGTCTGAAGACGGGC 715800 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 715801 ATGTACTACCTGCGAAC 715817 >seq30 Length=3684817 Score = 150 bits (166), Expect = 2e-31 Identities = 214/299 (72%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || ||||| || | ||||| | || ||||||||| ||||| || || || | |||| Sbjct 2173952 AGTCGAGTAAAGGTATAACGGGGACTAGCAGCATCCGAACCACCGGCGAGTCGAGAACCG 2174011 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| ||||| | | ||| | |||||| | ||||||||||| || |||| | Sbjct 2174012 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGGGCCAGG 2174071 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | || || |||||| ||||||||| ||||| || || ||||| || | ||| Sbjct 2174072 CCAATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTGGTATGCTGTCTGTTCAGACACA 2174131 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | | |||||| | || |||| |||||| |||||| ||| || | Sbjct 2174132 TAACCAGCCAATTCCACGACCTTCTTATCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 2174189 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTG 117595 | | |||||||||||||| ||||| | ||||||| || ||||||||| ||| || Sbjct 2174190 AGAGCACCTTGCGCTGACCGGGCTTGAAACCATCCAGGACCGAAGGGATCGATCGCATG 2174248 Score = 111 bits (122), Expect = 2e-19 Identities = 201/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || || ||| | || |||| || || |||||| ||||| || || || | || || Sbjct 2173955 CGAGTAAAGGTATAACGGGGACTAGCAGCATCCGAACCACCGGCGAGTCGAGAACCGAAG 2174014 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| Sbjct 2174015 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTTGATCCCACAAAGTTCTGGGCCAGGCCA 2174074 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || ||| ||| ||||||||||| || || ||||| || | | || Sbjct 2174075 ATGATGGTCTGTTGGAGAGACGCCTCACCGTGGTGGTATGCTGTCTGTTCAGACACATAA 2174134 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | | |||||| | ||| | |||||| |||||| || ||||| | | Sbjct 2174135 CCAGCCAATTCCACGACCTTCTTATCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGC 2174194 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||||||||| || || ||||| |||| || ||| ||||| ||| || Sbjct 2174195 ACCTTGCGCTGACCGGGCTTGAAACCATCCAGGACCGAAGGGATCGATCGCATG 2174248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215295459400