Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq28 100 2e-16
>seq28
Length=4887614
Score = 100 bits (110), Expect = 2e-16
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247
||||| || || ||| |||| |||||| | | | ||| |||||| || || ||
Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCACCAAAG 3687577
Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307
|||| ||||||||| |||||||| || || ||||| || | || | ||| | || ||
Sbjct 3687576 TGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGACCG 3687517
Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT--TACCCCCTTCTCAG 30365
||||| | || || | ||| || ||| ||||||||||||| | || | || | |
Sbjct 3687516 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 3687457
Query 30366 AGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424
|| ||| ||||| |||| ||||| || |||||| || ||||| | | |||||
Sbjct 3687456 AG-GCT-AGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGCG 3687400
Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
|||||| | |||||| |||||||||||
Sbjct 3687399 CGGGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 29833 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATC 29892
|||| ||||||| | ||| || | || || || || || || | || || | ||
Sbjct 3688030 CAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGTTGAGGGCATCGACATGGTC 3687971
Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGA 29951
|| |||||||| ||||| |||| | ||| | ||| || || ||| | | || ||
Sbjct 3687970 AAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGTACCAATTCGCAGA 3687912
Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011
|||| |||||||||| || || | | ||||||||| ||||| || || || || || |
Sbjct 3687911 CGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATGTTGAACGGAACGCCAAGAC 3687852
Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042
||||||| | || | |||||||||||| ||
Sbjct 3687851 CCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406309889953476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |