Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq28 100 2e-16 >seq28 Length=4887614 Score = 100 bits (110), Expect = 2e-16 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 ||||| || || ||| |||| |||||| | | | ||| |||||| || || || Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCACCAAAG 3687577 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 |||| ||||||||| |||||||| || || ||||| || | || | ||| | || || Sbjct 3687576 TGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGACCG 3687517 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT--TACCCCCTTCTCAG 30365 ||||| | || || | ||| || ||| ||||||||||||| | || | || | | Sbjct 3687516 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 3687457 Query 30366 AGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 || ||| ||||| |||| ||||| || |||||| || ||||| | | ||||| Sbjct 3687456 AG-GCT-AGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGCG 3687400 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||| | |||||| ||||||||||| Sbjct 3687399 CGGGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 29833 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATC 29892 |||| ||||||| | ||| || | || || || || || || | || || | || Sbjct 3688030 CAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGTTGAGGGCATCGACATGGTC 3687971 Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 || |||||||| ||||| |||| | ||| | ||| || || ||| | | || || Sbjct 3687970 AAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGTACCAATTCGCAGA 3687912 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 |||| |||||||||| || || | | ||||||||| ||||| || || || || || | Sbjct 3687911 CGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATGTTGAACGGAACGCCAAGAC 3687852 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||| | || | |||||||||||| || Sbjct 3687851 CCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309889953476