Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq28 91.5 1e-13
>seq28
Length=4887614
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/167 (74%), Gaps = 6/167 (4%)
Strand=Plus/Plus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTC 34385
||||||||||||| | || || || || || || ||||| | || || ||| |
Sbjct 3687473 AAGATCTGGGACGGCAATGGCTCCCGCGAGTTCCTCGACAACCTCGGTCTCAACCA--CC 3687530
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
| |||| |||||| | ||||| || ||||| ||||||||| | |||||||| || ||||
Sbjct 3687531 GCGAGGTTGGCGACCTTGGCCCCGTGTACGGCTTCCAGTGGCGGCACTTTGGTGCCGAGT 3687590
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT 34491
| || | || ||| ||||||| |||| ||||||| ||||||||
Sbjct 3687591 A-CGTCGACGCCAAGACGGACTACACGGGCCAGGGAGTCGACCAGCT 3687636
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/167 (74%), Gaps = 6/167 (4%)
Strand=Plus/Minus
Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAA 6912
|||||||| ||||||| |||| ||||||| ||| || | || ||||| || |||||
Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACG-TACTCGGCACCAAA 3687578
Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG--GAAC 6970
||| | ||||||||| ||||| || ||||| | |||||| |||| || ||| ||
Sbjct 3687577 GTGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGG--TGGTTGAGA 3687520
Query 6971 CCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|| | ||||| || || || || || || | |||||||||||||
Sbjct 3687519 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 3687473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| || ||||| | |||||||| | || || |||||||||||||| ||
Sbjct 3687820 CTGCCAGCTCTACCAGCGATCCTGCGACATGGGTCTTGGCGTTCCGTTCAACATTGCCAG 3687879
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746
||||| |||| || ||||||| || || ||| | ||||| |||||
Sbjct 3687880 CTACGCGTTGCTGACACACATGATGGCGCACGTCTGCGAATTGGTACCTGG 3687930
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 6599 CCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATG 6658
||||| ||||| | ||| || || ||||||| || |||| ||||| || ||||||
Sbjct 3687930 CCAGGTACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATG 3687871
Query 6659 TTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|||||||| || || | |||||||| | ||||| || ||||||||||||
Sbjct 3687870 TTGAACGGAACGCCAAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCAG 3687820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448261822862160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |