Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 1e-13 >seq28 Length=4887614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTC 34385 ||||||||||||| | || || || || || || ||||| | || || ||| | Sbjct 3687473 AAGATCTGGGACGGCAATGGCTCCCGCGAGTTCCTCGACAACCTCGGTCTCAACCA--CC 3687530 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | |||| |||||| | ||||| || ||||| ||||||||| | |||||||| || |||| Sbjct 3687531 GCGAGGTTGGCGACCTTGGCCCCGTGTACGGCTTCCAGTGGCGGCACTTTGGTGCCGAGT 3687590 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT 34491 | || | || ||| ||||||| |||| ||||||| |||||||| Sbjct 3687591 A-CGTCGACGCCAAGACGGACTACACGGGCCAGGGAGTCGACCAGCT 3687636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||||||| ||||||| |||| ||||||| ||| || | || ||||| || ||||| Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACG-TACTCGGCACCAAA 3687578 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG--GAAC 6970 ||| | ||||||||| ||||| || ||||| | |||||| |||| || ||| || Sbjct 3687577 GTGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGG--TGGTTGAGA 3687520 Query 6971 CCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||||| || || || || || || | ||||||||||||| Sbjct 3687519 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 3687473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| || ||||| | |||||||| | || || |||||||||||||| || Sbjct 3687820 CTGCCAGCTCTACCAGCGATCCTGCGACATGGGTCTTGGCGTTCCGTTCAACATTGCCAG 3687879 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||||| |||| || ||||||| || || ||| | ||||| ||||| Sbjct 3687880 CTACGCGTTGCTGACACACATGATGGCGCACGTCTGCGAATTGGTACCTGG 3687930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 6599 CCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATG 6658 ||||| ||||| | ||| || || ||||||| || |||| ||||| || |||||| Sbjct 3687930 CCAGGTACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATG 3687871 Query 6659 TTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| || || | |||||||| | ||||| || |||||||||||| Sbjct 3687870 TTGAACGGAACGCCAAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCAG 3687820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261822862160