Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-18 seq32 84.2 2e-11 >seq41 Length=1307349 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || |||||||| || || || || || ||| || || || | || || Sbjct 954345 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 954404 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| ||||| ||||||||||||| ||| | || ||| |||||| | Sbjct 954405 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 954464 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| |||||||| || | |||||| | || Sbjct 954465 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTT 954523 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || || || || ||||| |||||||| Sbjct 954524 CCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 954556 >seq32 Length=3227256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || | || || || |||| || ||||| || || ||||| Sbjct 1807438 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 1807497 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| ||||||||||||| ||| | | ||| |||||| || || || | | Sbjct 1807498 ATAAGTCGCTGCTGGTCGG-GGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACATTA 1807556 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||||| ||||| || |||| ||||| | ||||| || || || || ||| Sbjct 1807557 TCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACA 1807616 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 1807617 AAGATCTGCAT 1807627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545060786039