Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq41 145 2e-29
seq32 131 4e-25
seq4 129 1e-24
seq37 91.5 4e-13
>seq41
Length=1307349
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||||||| || || |||| ||||| ||| || || | |||||
Sbjct 954342 AGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 954401
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||||||||| || |||||||| ||||| || ||||||||
Sbjct 954402 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 954461
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | ||||| |||
Sbjct 954462 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 954521
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | || || | ||| | ||||| ||
Sbjct 954522 TTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 954556
>seq32
Length=3227256
Score = 131 bits (144), Expect = 4e-25
Identities = 159/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| ||||| || || || |||| ||||| ||| | ||||| || ||
Sbjct 1807644 AGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 1807703
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||
Sbjct 1807704 TCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTATCC 1807763
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA-CGTGATCG- 225679
|| ||||| |||||| ||||| ||||| || | |||||| || || ||||| |
Sbjct 1807764 TGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCACCTCGAAGGGTGATGGT 1807823
Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||| || || | ||| || | ||| | ||||||
Sbjct 1807824 TCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| ||||| || || |||| |||||||||| | || | |||||
Sbjct 1808084 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCC 1808143
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || || || || || || || || || || ||||||||
Sbjct 1808144 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 1808203
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| |||||||| || |||| || || || | ||||| |||
Sbjct 1808204 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGGGTGATGGTC 1808263
Query 225682 TTGCCCGTCA 225691
||||||||||
Sbjct 1808264 TTGCCCGTCA 1808273
Score = 109 bits (120), Expect = 1e-18
Identities = 143/197 (73%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||| || || ||||| || || | ||||| || | | || | || ||
Sbjct 1807417 AGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCC 1807476
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||||||||| || |||||||| || ||||| ||||||||
Sbjct 1807477 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGG-GGGATACCCTCCTTGTCC 1807535
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| || ||||| || || || || || | ||||| |||
Sbjct 1807536 TGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGACCTCCAGAGTGATGGTC 1807595
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || || | ||| ||
Sbjct 1807596 TTTCCTGTGAGAGTCTT 1807612
>seq4
Length=1115785
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||||| ||||| || |||||||| |||||||||||
Sbjct 972054 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 972113
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| || || || || ||||| || |||||||| |||||||| ||| ||| ||
Sbjct 972114 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 972173
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 972174 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 972232
>seq37
Length=4018383
Score = 91.5 bits (100), Expect = 4e-13
Identities = 169/248 (68%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | | || ||||||| |||||||| | || |||
Sbjct 714845 TTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 714786
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||| ||| || ||| || | || || |||| ||| | | ||||
Sbjct 714785 GTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTG 714726
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| || |||| ||||| |||||||| |||| || || | |||||| ||| |||||
Sbjct 714725 CCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGA 714666
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|||||| || || || || | ||| |||| || || | | || || | |||||||
Sbjct 714665 CCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATG 714606
Query 193740 AAGAGGTC 193747
||||| ||
Sbjct 714605 AAGAGATC 714598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192529626231482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |