Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq28 96.9 3e-15 >seq28 Length=4887614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 198/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589 ||||||||| ||||||| | || ||||| || || | | || | ||| || | Sbjct 3688108 GTGAGGGTCATAGCCCTTGATAACAAAGTCCTCCGCGTTCCACCCATCAATGCTG-CCGC 3688050 Query 29590 CCTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645 ||| || | | ||| |||| ||||||| | ||| || | || || || | Sbjct 3688049 CCTTCTCTCGGGTGATCTCCAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGT 3687990 Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG-GACAAACTCT 29704 | || | || || |||||||| |||||||| || || |||| | ||| | ||| || Sbjct 3687989 TGAGGGCATCGACATGGTCAAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG- 3687931 Query 29705 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29764 || ||| | | || |||||| |||||||||| || || | | ||||||||| ||| Sbjct 3687930 CCAGGTACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATG 3687871 Query 29765 TTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 || || || || || || |||||||| | || | ||||||||||||||| Sbjct 3687870 TTGAACGGAACGCCAAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||| ||||||||| |||||||| || || ||||| || | || | ||| | || Sbjct 3687579 AAGTGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGA 3687520 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||| | || || | ||| || ||| ||||||||||||| | || |||| Sbjct 3687519 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCG 3687460 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| ||||| |||| ||||| || |||||| || ||||| | | ||||| Sbjct 3687459 CTGAGGCTAGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGC 3687401 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 |||||| | |||||| ||||||||||| Sbjct 3687400 GCGGGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162690138258