Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq28 96.9 3e-15
>seq28
Length=4887614
Score = 96.9 bits (106), Expect = 3e-15
Identities = 198/290 (68%), Gaps = 7/290 (2%)
Strand=Plus/Minus
Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589
||||||||| ||||||| | || ||||| || || | | || | ||| || |
Sbjct 3688108 GTGAGGGTCATAGCCCTTGATAACAAAGTCCTCCGCGTTCCACCCATCAATGCTG-CCGC 3688050
Query 29590 CCTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645
||| || | | ||| |||| ||||||| | ||| || | || || || |
Sbjct 3688049 CCTTCTCTCGGGTGATCTCCAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGT 3687990
Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG-GACAAACTCT 29704
| || | || || |||||||| |||||||| || || |||| | ||| | ||| ||
Sbjct 3687989 TGAGGGCATCGACATGGTCAAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG- 3687931
Query 29705 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29764
|| ||| | | || |||||| |||||||||| || || | | ||||||||| |||
Sbjct 3687930 CCAGGTACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATG 3687871
Query 29765 TTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814
|| || || || || || |||||||| | || | |||||||||||||||
Sbjct 3687870 TTGAACGGAACGCCAAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| |||| ||||||||| |||||||| || || ||||| || | || | ||| | ||
Sbjct 3687579 AAGTGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGA 3687520
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| ||||| | || || | ||| || ||| ||||||||||||| | || ||||
Sbjct 3687519 CCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCG 3687460
Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195
||| ||||| |||| ||||| || |||||| || ||||| | | |||||
Sbjct 3687459 CTGAGGCTAGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGC 3687401
Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
|||||| | |||||| |||||||||||
Sbjct 3687400 GCGGGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406162690138258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |