Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq43 96.9 3e-15
seq28 95.1 9e-15
>seq43
Length=2522723
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/180 (74%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568
||||||||| | ||||||| ||| | || |||| ||||||||||| || || |
Sbjct 666837 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCTCAGATTGGTGACAAGTTCGCCTCTCG 666896
Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626
|||||| || ||||| ||| ||| | | ||| ||| |||||||| |||||||||
Sbjct 666897 TCACGGA-CAGAAGGGTACAATTGGTGTCA-CCT-ACCGACAGGAGGATATGCCCTTCAG 666953
Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686
|| ||| || ||| || ||| | ||||| |||||||||||| ||||||| | |||||
Sbjct 666954 CAGGGAGGGTGTGACACCAGACATTATCATTAACCCCCACGCCATTCCCTCGCGAATGAC 667013
>seq28
Length=4887614
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 27099 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 27158
|||| ||||||| | ||| || | || || || || || || | || || || ||
Sbjct 3688030 CAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGTTGAGGGCATCGACATGGTC 3687971
Query 27159 CAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGA 27217
|| |||||||| ||||| |||| | ||| | ||| || || ||| | | || ||
Sbjct 3687970 AAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGTACCAATTCGCAGA 3687912
Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277
|||| |||||||||| || || | | ||||||||| ||||| || || || || || |
Sbjct 3687911 CGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATGTTGAACGGAACGCCAAGAC 3687852
Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308
||||||| | || | |||||||||||| ||
Sbjct 3687851 CCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821
Score = 93.3 bits (102), Expect = 3e-14
Identities = 184/270 (68%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513
||||| || || ||| |||| |||||| | | ||| |||||| || || ||
Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCACCAAAG 3687577
Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573
|||| ||| ||||| |||||||| || || ||||| || | || | ||| | || ||
Sbjct 3687576 TGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGACCG 3687517
Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 27633
||||| | || || | ||| || ||| ||||||||||||| | || |||| |
Sbjct 3687516 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 3687457
Query 27634 AGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692
|| ||||| |||| ||||| || |||||| || ||||| | | |||||
Sbjct 3687456 AGGCTAGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGCGCG 3687398
Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
|||||| | |||||| |||||||||||
Sbjct 3687397 GGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369506736152993
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |