Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04- 27] 103 sequences; 46,940,970 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 3e-15 seq28 95.1 9e-15 >seq43 Length=2522723 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568 ||||||||| | ||||||| ||| | || |||| ||||||||||| || || | Sbjct 666837 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCTCAGATTGGTGACAAGTTCGCCTCTCG 666896 Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626 |||||| || ||||| ||| ||| | | ||| ||| |||||||| ||||||||| Sbjct 666897 TCACGGA-CAGAAGGGTACAATTGGTGTCA-CCT-ACCGACAGGAGGATATGCCCTTCAG 666953 Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || ||| || ||| || ||| | ||||| |||||||||||| ||||||| | ||||| Sbjct 666954 CAGGGAGGGTGTGACACCAGACATTATCATTAACCCCCACGCCATTCCCTCGCGAATGAC 667013 >seq28 Length=4887614 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27099 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 27158 |||| ||||||| | ||| || | || || || || || || | || || || || Sbjct 3688030 CAGTTCGGGAAAGTTGCGGGGTTCACGTTCAAGTTGTGTGTTGAGGGCATCGACATGGTC 3687971 Query 27159 CAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 || |||||||| ||||| |||| | ||| | ||| || || ||| | | || || Sbjct 3687970 AAGATAGACGTGTGCGTCGCCCATGACGTGAGTCAAGCTG-CCAGGTACCAATTCGCAGA 3687912 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 |||| |||||||||| || || | | ||||||||| ||||| || || || || || | Sbjct 3687911 CGTGCGCCATCATGTGTGTCAGCAACGCGTAGCTGGCAATGTTGAACGGAACGCCAAGAC 3687852 Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||||||| | || | |||||||||||| || Sbjct 3687851 CCATGTCGCAGGATCGCTGGTAGAGCTGGCA 3687821 Score = 93.3 bits (102), Expect = 3e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 ||||| || || ||| |||| |||||| | | ||| |||||| || || || Sbjct 3687636 AGCTGGTCGACTCCCTGGCCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCACCAAAG 3687577 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 |||| ||| ||||| |||||||| || || ||||| || | || | ||| | || || Sbjct 3687576 TGCCGCCACTGGAAGCCGTACACGGGGCCAAGGTCGCCAACCTCGCGGTGGTTGAGACCG 3687517 Query 27574 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 27633 ||||| | || || | ||| || ||| ||||||||||||| | || |||| | Sbjct 3687516 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 3687457 Query 27634 AGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 || ||||| |||| ||||| || |||||| || ||||| | | ||||| Sbjct 3687456 AGGCTAGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATAACGGCGCG 3687398 Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||||| | |||||| ||||||||||| Sbjct 3687397 GGTAAAGACGCGCTTGGTGGTGAGGAGGGG 3687368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506736152993