Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq41 183 6e-41
seq32 150 4e-31
seq4 134 3e-26
seq54 105 1e-17
seq43 84.2 5e-11
>seq41
Length=1307349
Score = 183 bits (202), Expect = 6e-41
Identities = 179/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | ||||| || || ||||||||||||||
Sbjct 954326 ACCACCACGCAGGCGGAGGACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 954385
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||| | || || ||||| ||
Sbjct 954386 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGG 954445
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 954446 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 954505
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| ||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 954506 CTCAAGGGTGATAGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 954556
>seq32
Length=3227256
Score = 150 bits (166), Expect = 4e-31
Identities = 173/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| ||||| ||||| || | || || || ||||||||||||||
Sbjct 1807628 ACCACCACGCAGACGAAGAACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 1807687
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| ||||| || ||||| ||||| | || ||||||||| ||
Sbjct 1807688 GAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGG 1807747
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| || || ||||| | || ||| ||||||| ||||| || | ||| ||
Sbjct 1807748 AATTCCTTCCTTATCCTGAATCTTCGACTTCACGTTATCGATTGTGTCGGACGATTCCAC 1807807
Query 283052 TTCG-AGAGTGATCG-TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || ||||| | |||| || || | |||||| ||||| || |||||
Sbjct 1807808 CTCGAAGGGTGATGGTTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 1807857
Score = 131 bits (144), Expect = 4e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || || ||||| | ||| || || ||||||||||| || | |
Sbjct 1808069 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAA 1808128
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || ||||| || |||| || || || ||| ||
Sbjct 1808129 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGAGGG 1808188
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || || | ||||| || || || | || ||
Sbjct 1808189 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 1808248
Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077
||||| ||||| ||||| |||||||
Sbjct 1808249 TCGAGGGTGATGGTCTTGCCCGTCA 1808273
Score = 123 bits (136), Expect = 5e-23
Identities = 165/228 (72%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || || || | || ||| || || |||||||||||||
Sbjct 1807401 ACCGCCACGGAGACGGAGCACAAGGTGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGA 1807460
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || |||||||| | || || ||||| ||
Sbjct 1807461 GAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCGGGGGG 1807520
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
| ||||||||||||| || ||||| | || || |||| || || || | |||||
Sbjct 1807521 A-TACCCTCCTTGTCCTGAATCTTGGACTTCACATTATCAATGGTATCGCTGGACTCGAC 1807579
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || || | |||||| || || ||||||||
Sbjct 1807580 CTCCAGAGTGATGGTCTTTCCTGTGAGAGTCTTGACAAAGATCTGCAT 1807627
>seq4
Length=1115785
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || || || ||||||
Sbjct 972054 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 972113
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || || || ||||| ||||||||||| |||||||| | || || | ||
Sbjct 972114 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 972173
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 972174 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 972232
>seq54
Length=1261221
Score = 105 bits (116), Expect = 1e-17
Identities = 172/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| || | || | | ||| |||||||| | || ||| | || |||
Sbjct 1145400 ATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTGACTGAGGCTCTCCCCTGCGCC 1145341
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| |||||||||| || | |||||| ||| || ||||| ||||| || || ||| |
Sbjct 1145340 CTCCTCGGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGTCTC 1145281
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
|||| || || || ||||||| || || || || |||||||||| || ||||||
Sbjct 1145280 CTCGTCGCCCTGGGCAACGAGAAGGTCTACAAGTCTGCCAACCCCTTCGACTTCATGGAG 1145221
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || || || ||||||||||| ||||||||| | || || || | |
Sbjct 1145220 AACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 1145161
Query 230403 CCCGGTGT 230410
| |||||
Sbjct 1145160 GCTGGTGT 1145153
>seq43
Length=2522723
Score = 84.2 bits (92), Expect = 5e-11
Identities = 122/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726
|| ||||| |||| ||||| || |||| | || |||||||||| || || || | |
Sbjct 2120485 ACACCACCCTCGAAGTTCTTGAGAGCCTTGGACAGGGCACCGAGAGAGTCACGATCGAGA 2120426
Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCG-GCGCCGAT 315785
||||||| ||||| ||||| ||||| | || ||| | ||||| ||||| || |||
Sbjct 2120425 TAGTTGGTGGGCTCGTCAAGGACGATAAGATGAGGTCGCTGCCA-AGAGCAAGCAGCGAG 2120367
Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835
|| ||| | || ||||||||||| ||||| ||||| || ||||
Sbjct 2120366 CACAGTCTTGACACGCTGACCACCAGACAGACCACGCATGCGGGAGTGAG 2120317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046737818631362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |