Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20FSSC_5F6_20[genbank_20GCA_5F001633045.1_202016-04-
27] 103 sequences; 46,940,970 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq32 167 6e-36
seq4 136 1e-26
seq41 132 1e-25
seq37 91.5 4e-13
seq30 87.8 4e-12
>seq32
Length=3227256
Score = 167 bits (184), Expect = 6e-36
Identities = 164/209 (78%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAA-AACGATCACCCT-CGAGGTGGAAAGCTCAG 177981
||||| ||||| || |||||||| ||||| ||| |||||||| |||||||||| || |
Sbjct 1807854 CAAATCTTCGTCAAGACTCTCACTGGAAAGAACCATCACCCTTCGAGGTGGAATCGTCCG 1807795
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| ||||| ||||| || ||||||||||| || |||||||| ||||| ||||| |
Sbjct 1807794 ACACAATCGATAACGTGAAGTCGAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAAC 1807735
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| ||||||||||||||||| || || ||||| || || | ||||| ||| || |||
Sbjct 1807734 AGCGACTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTCAGCGACTACAACA 1807675
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| || || || || ||||| || |||
Sbjct 1807674 TCCAGAAGGAGTCTACTCTGCACCTGGTT 1807646
Score = 140 bits (154), Expect = 8e-28
Identities = 142/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||||||||| || ||| || |||||||| || |||||
Sbjct 1808271 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACCATCGACAATGTCAAGTCG 1808212
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || |||||||| || ||||| || || || |||||||| ||
Sbjct 1808211 AAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATTTTCGCCGGCAAG 1808152
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || ||| ||||||| ||| |||| || || || || || |||
Sbjct 1808151 CAGCTTGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1808092
Query 178125 CTTGT 178129
|| ||
Sbjct 1808091 CTCGT 1808087
Score = 125 bits (138), Expect = 2e-23
Identities = 152/206 (74%), Gaps = 1/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || |||||||||||||| || ||||| || ||||| || | ||
Sbjct 1807624 CAGATCTTTGTCAAGACTCTCACAGGAAAGACCATCACTCTGGAGGTCGAGTCCAGCGAT 1807565
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || |||||||||||||| || || ||||| || ||||||||
Sbjct 1807564 ACCATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCC-CCCGACCAGCAG 1807506
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || ||||| || || || | || || | || || ||| |
Sbjct 1807505 CGACTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAACATT 1807446
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || ||||| |||||
Sbjct 1807445 CAGAAGGAATCGACCCTGCACCTTGT 1807420
>seq4
Length=1115785
Score = 136 bits (150), Expect = 1e-26
Identities = 138/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 972233 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 972174
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
|| || ||||| ||||| |||||||| || || || || ||||| ||||| |||||
Sbjct 972173 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 972114
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 972113 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 972054
>seq41
Length=1307349
Score = 132 bits (146), Expect = 1e-25
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 954550 CAGATCTTCGTCAAGACCCTTACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 954491
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || || || ||||||||
Sbjct 954490 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 954431
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 954430 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 954371
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 954370 CAGAAGGA 954363
>seq37
Length=4018383
Score = 91.5 bits (100), Expect = 4e-13
Identities = 180/264 (68%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| | ||| ||||| ||||| || | ||
Sbjct 714849 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCAGT 714790
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
|||| ||||| | || ||| || |||||| | |||||||||| | | || | |
Sbjct 714789 CTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTC-TTGCGAC 714731
Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
||| || | || || ||||| || || |||| ||| || ||| ||||||| ||
Sbjct 714730 CCTTGCCGGCCTTCTCATACTTCTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGG 714671
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366
| ||||||||| ||||||||| || | ||| |||| | || || | | ||| | |
Sbjct 714670 CGAGACCGGGACACTCGTTGGGACACATCAGAGTCCAGTCACCGTTCTTCTCGACACGCT 714611
Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390
||||||| || |||| | ||||||
Sbjct 714610 TCATGAAGAGATCGGGAATCCAGA 714587
>seq30
Length=3684817
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||||| ||||| || ||||||| ||||| ||| || |||
Sbjct 2692011 CAAATCTTCGTCAAGGCTCTCACTGGAAAGACCATCACCCCCGAGGGGGAGTCTTCCGAC 2692070
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| |||||||| |||||||||||||| || ||
Sbjct 2692071 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGG 2692111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203729611450982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |