Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq20 107 2e-18 seq32 87.8 2e-12 >seq20 Length=1074596 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || ||||| || ||||||||||| | Sbjct 146583 CCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTC 146642 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || ||| | ||||| | ||||||||| || Sbjct 146643 AGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGA 146702 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| ||||| | | ||| Sbjct 146703 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCAACC 146762 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| || || ||||| || |||||||| Sbjct 146763 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||| |||||||||||| || ||||| || || || Sbjct 147670 CCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147729 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || |||| | || |||||||||| ||| Sbjct 147730 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGG 147789 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| || || || ||| Sbjct 147790 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 147849 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||||||||||||||| || Sbjct 147850 TCGAGGGTAATGGTCTTGCCCGT 147872 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||||||||| || ||||| || || || Sbjct 147039 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147098 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||| || || ||||| ||| | || || | ||| ||||| ||| Sbjct 147099 AGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGG 147158 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| ||| || || ||| Sbjct 147159 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACC 147218 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 || | ||||||||||||||| || | || ||||||| Sbjct 147219 TCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAA 147255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||| |||||||||||| || ||||| || || || Sbjct 147322 CCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147381 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || |||| | || |||||||||| ||| Sbjct 147382 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGG 147441 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 147442 ATGCCCTCCTTGTC 147455 >seq32 Length=2292469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | |||||| || | ||||| ||||| ||||| ||| | | Sbjct 449923 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 449982 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | |||| |||||| ||| ||| | ||| |||||||| |||||| || || | | Sbjct 449983 TGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 450042 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| ||| || || ||| || | ||| ||||||||||| || Sbjct 450043 CGATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 450088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258649347612