Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq35 248 9e-61 seq2 149 6e-31 seq20 143 3e-29 seq32 132 5e-26 >seq35 Length=674057 Score = 248 bits (274), Expect = 9e-61 Identities = 546/808 (68%), Gaps = 23/808 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | |||||| Sbjct 114604 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACCTG 114663 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| || ||| | ||| | | | | |||||| || || Sbjct 114664 TCTAAGGATCTTCATGATTGGAACAACCGCCTAACTGCCGACGAGCAGTTCTTTGTCTCT 114723 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || || || || ||||| ||||||||||| || || ||||| Sbjct 114724 CACATCCTTGCCTTCTTTGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTTGAGCGG 114783 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | | ||||| || |||||||| || || |||||| ||| Sbjct 114784 TTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGATCATGATG 114843 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 ||||| | || || || | || ||| || |||||||| ||| | | || |||| Sbjct 114844 GAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACATCAAGGAGC-CTTC 114902 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | || | | || || || |||||||| || || || || | ||||||| Sbjct 114903 TCA-GCGCACCTAC--CTCTTCAATGCTATCGAGACCATCCCCTGTATCCGAAAGAAGGC 114959 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| | || |||||| | || | | |||| | | |||| ||||| || Sbjct 114960 CGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTGGTTGC 115019 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || |||||||| | ||||| ||| ||||| |||| || |||||||| Sbjct 115020 CTTCGCTGCTGTCGAGGGTATTTTCTTCAGCGGCGCCTTCGCTTCCATCTTCTGGCTCAA 115079 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| ||||| || ||||| || ||||||||| |||||||||||||| | |||||||| Sbjct 115080 GAAGCGCGGTCTTATGCCTGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGG 115139 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || ||||||||| || | || | || | || | ||| || | || Sbjct 115140 TCTCCACACCGACTTTGCTTGCCTCCTCCACTCCCACCT----CAAGGGCCGTGC-CAGC 115194 Query 117229 --GCGCGTCA---GGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 || |||| ||| ||| | || || || || |||||||||| ||||| ||| Sbjct 115195 AAGCAGGTCATTCAGGACATCATTACTGATGCCGTGAACATCGAGCAGGAGTTCCTTACC 115254 Query 117284 GAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 || || ||||| |||| ||||| || | ||| ||| ||| ||| ||||| || Sbjct 115255 GAGGCTCTGCCTTGTGC-CCTGCTCGGCATGAATGCCGACCTCATGAAGCAGTACATTGA 115313 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAA 117402 |||||| || ||| | || || ||| || | || ||| ||| || | |||| Sbjct 115314 GTTCGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAGGTCTATAAGTCTTCCAA 115373 Query 117403 CCCGCTGGACTTTATGAACCTCATCTCC 117430 ||| | ||||| ||| | ||||||| Sbjct 115374 CCCCTTCGACTTCATGGAGAACATCTCC 115401 >seq2 Length=1405217 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 409324 AAGATGCAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 409265 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 409264 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 409206 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 409205 TCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 409146 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || ||| | ||| || | || || Sbjct 409145 CAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGG 409095 >seq20 Length=1074596 Score = 143 bits (158), Expect = 3e-29 Identities = 145/186 (78%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| ||||| ||| |||| ||||| || | |||| | | | |||| ||||| Sbjct 147872 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAAGTC 147814 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| |||||||||||| |||||||||| ||| | || | ||| ||||| Sbjct 147813 CAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAA 147754 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||||||| ||| |||||||||||||||||| |||| ||||| Sbjct 147753 GCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCA 147694 Query 40893 TCTAGT 40898 || || Sbjct 147693 CCTTGT 147688 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||| || ||||||||| |||| || || | || Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || || | ||||| |||||||| ||| |||| ||| Sbjct 146977 GATACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 146918 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| || |||||||| || |||| || || |||| |||||||||| Sbjct 146917 CAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGACGAACTCTCAGCGACTACAAC 146858 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||| | || ||||| || || |||| Sbjct 146857 ATTCAGAAGGAATCTACTCTGCACCTGGTCCTGCG 146823 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || ||||| ||||| ||||| ||| |||| ||||| || |||||| | | Sbjct 147253 GTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCGAC 147194 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | ||||| || |||| ||||| |||||||||||| | ||||| || || || ||| Sbjct 147193 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGATC 147134 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | || ||||| || || || || | || |||||| ||| |||||||||||||||||| Sbjct 147133 TTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGGAG 147074 Query 40882 GCCACGCTGCATCTAGT 40898 |||| || || || || Sbjct 147073 TCCACTCTCCACCTTGT 147057 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| |||||||||| ||| | || | ||| ||||| Sbjct 147464 AAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAG 147405 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| ||| |||||||||||||||||| |||| ||||| Sbjct 147404 CAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCAC 147345 Query 40894 CTAGT 40898 || || Sbjct 147344 CTTGT 147340 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || || || | | | Sbjct 146809 ATGCAAATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAGTCAAGC 146750 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||| || || | ||||| Sbjct 146749 GATACCATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCA 146691 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| ||||| || | |||||| || Sbjct 146690 GCAGCGCCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACTCTGAGCGACTATAA 146631 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 146630 CATCCAGAAGGAATCTACTCTTCACCTGGT 146601 >seq32 Length=2292469 Score = 132 bits (146), Expect = 5e-26 Identities = 140/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 450103 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACTATC 450044 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||| ||||| ||||| Sbjct 450043 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 449985 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 ||||| || ||||| ||||| || || | || |||||| |||||||||||||||||| Sbjct 449984 CATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 449925 Query 40878 GG 40879 || Sbjct 449924 GG 449923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218510894320