Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq30 286 3e-72 seq35 152 5e-32 seq20 113 4e-20 >seq30 Length=762562 Score = 286 bits (316), Expect = 3e-72 Identities = 1124/1756 (64%), Gaps = 46/1756 (3%) Strand=Plus/Plus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA 22300 |||| ||||| |||||| ||||| || ||||| ||||| ||||| | | | Sbjct 621316 TTGAGGGACTGGGACTGATCAATAAAGGCACCTCGGTCGGCAGCCATCTGGACGACCTGG 621375 Query 22301 CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG 22360 ||| || || ||||| || ||||||||||| | ||| || || || | | Sbjct 621376 CGCTGTGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACTTCGGCAGGGATGTTTGGG 621435 Query 22361 ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAA 22420 || |||||| ||| ||||| | | ||||| || || || | ||| ||||||| Sbjct 621436 ATGTTCTGGATGGAGCCGTTCTCGGCAATGATTCGGTTCTTCATGGCATCCGACCACAAA 621495 Query 22421 CCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG 22480 || ||| || | ||| |||| ||| ||||||| || || ||||| || | | | Sbjct 621496 CCCATGTCGACGAGATCCTTGAGCAGCCAGGGGTTCACGACCTGGAACTCACCAGCAAGG 621555 Query 22481 ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATC 22540 || ||||| ||||| |||||||| ||| | || || || | || || || ||||| ||| Sbjct 621556 ACTCGGCGCTGGTAGATGTTGGAAGTGTAAGGCTCAAAGCACTCGTTATTGCCCAGGATC 621615 Query 22541 TGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT-- 22598 || | ||| || || ||||| || || | || | ||| | | ||||| | Sbjct 621616 TGCGAGGTACTGGCAGTGGGCATGGGTGCAAGGAGCAAACTGTTGCGGATACCGTGTTCC 621675 Query 22599 TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCC 22658 |||| | | |||| ||| || ||||||||| || ||||| ||| |||| || || Sbjct 621676 TTGACCTGCT-CTCT-GAGAGTCTCCCAGTCCCAAAGGTCGGAGGGCTTCACGTT---CC 621730 Query 22659 ACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGG 22716 |||||||| | || | | || | || || ||| ||| | | | || ||| || Sbjct 621731 ACATATCGAACTGGAGGATACCCTCGGAA--GCAGGGGAGCCCTTGAAGGTGGAGTAGGG 621788 Query 22717 ACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC-GCGCCGTAATATATAGTCTCGA 22775 ||| | | || || | ||| | | | | || ||| ||| || ||||| | Sbjct 621789 ACCTTCCTCCTTAGCCAGCT-GCACCGAGGCAGTGAGAGCAGCGTGATAGATGGTCTCAA 621847 Query 22776 AGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATC 22831 | || | |||||| | || || || ||| ||| | ||||| |||| Sbjct 621848 AAATCTGCTTGTTGAGCTCACGAGCCTCAGGAGAC----TCGAAGGGCATGCGCAGAGCA 621903 Query 22832 ACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGAC 22891 | ||| || ||||| | |||||| ||||| | |||||| ||||||| || || Sbjct 621904 AGGAAAGCATCCGCAAGACCCTGGACGCCAACACCGATAGGTCGGTGACGCATGTTG--- 621960 Query 22892 ACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCT 22947 || |||| ||| || | |||||| ||| ||| || | ||||| | || | Sbjct 621961 -CTGTTGCGGGCCTCAGGGACAGGATAGTGGTTCACATCAATGATCCTGTTGAGATTGCG 622019 Query 22948 GGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAAC 23007 |||| | || | || ||||| || || | || || | Sbjct 622020 AACGACAACCTGGGTGACCTTGTGCAGCTTCTCGAAGTCATA---GCAGGCTT---CATC 622073 Query 23008 AAACTTGTTG----ACGGC-GATCGAGGCA----AGATTGCATACGGCCACCTCGTCTTT 23058 | ||| || | ||| || ||||| | || ||||| || || ||||| || Sbjct 622074 GTAGTTGATGTACGAGGGCAGAGCGAGGGATGCCAGGTTGCACACAGCAACCTCATCAGG 622133 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 || |||||| | ||| || || || | ||| | || || |||| || | Sbjct 622134 GGCACAGTACTCAATAATCTCAGTGCACAAGTTGGAGCTTCGAATGGTACCCAGGTTCTT 622193 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 |||||| || || || ||||| ||||||||||||||| | || |||| |||||| Sbjct 622194 CTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGT 622253 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGC 23237 ||| | ||| | || || ||| | ||||||| | | ||| || || ||| Sbjct 622254 CTGAGCCTCAAGAATAGCATACCAGAGCTTCTGAGCCTTGA-TGGTCTTGCGACCCTTGC 622312 Query 23238 CTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGC 23297 | | | ||||||||| | |||| || ||||| || | ||||| |||||||| || | Sbjct 622313 CAGCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATCGCCGTAGCAGTCGGCAAGAC 622372 Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 |||| | | | || |||||||| |||| || || ||||| || |||| | Sbjct 622373 CGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATGA 622432 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | ||||| || ||||| ||||| |||||| ||||| ||||| |||||||| |||||| Sbjct 622433 AGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGT 622492 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 |||||| || || | || || || || |||| ||||| ||||| ||||| | | Sbjct 622493 GGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATAG 622552 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 | || || || |||| ||| ||||| ||||| || || || ||||| ||||||||| | | Sbjct 622553 CGAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCGGGCAGTGTTGTTGAAGA 622612 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597 ||| ||||| || || |||||||| | ||| || || | || || Sbjct 622613 CTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCGG 622672 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | || || | | ||| |||| | ||| ||||| || || || || ||||| || | Sbjct 622673 TGGCACGGATGCGGTGCACGTTCAGACCAATGCCACCAGCCATCTTGGAAATCATGGCAC 622732 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | || ||||| || ||||| ||||| ||||||||||| || | | |||| ||| | Sbjct 622733 AGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGAAGC 622792 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 | ||||||| || | | || || | || ||| || || ||| |||||| || | Sbjct 622793 ATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGGTGA 622852 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 || | ||||||| || ||||| || || | | | ||||| || || || | Sbjct 622853 AGAACTTGCTCGACATGAGGTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCCAGA 622912 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTT 23897 | || | | || ||||| ||||||| ||||| | |||||| | | | ||| | Sbjct 622913 TGCCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTGTTATCAATCT 622972 Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957 ||| || ||||| || | || || || || ||||| || | || | |||||||| | Sbjct 622973 TGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCACGGT 623032 Query 23958 CGTGCACTATGGCCGA 23973 | | || ||||| || Sbjct 623033 CATAGACAATGGCAGA 623048 >seq35 Length=674057 Score = 152 bits (168), Expect = 5e-32 Identities = 543/836 (65%), Gaps = 21/836 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| || | |||||| Sbjct 114604 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACCTG 114663 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAAATT--TTATTAAA 57686 ||||||||||| |||||| | || | | | || ||| | || || | Sbjct 114664 TCTAAGGATCTTCATGATTGGAACAACCGCCTAACTGCCGACGAGCAGTTCTTTGTCTCT 114723 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || || || || || ||||| ||||| |||||||| | || || | Sbjct 114724 CACATCCTTGCCTTCTTTGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTTGAGCGG 114783 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || | | ||||| ||||||| || ||||| || | || Sbjct 114784 TTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGATCATGATG 114843 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864 || || | ||||| || | || ||||| || ||||| || ||| | ||||| | | Sbjct 114844 GAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACATCAAGGAGCCTTCT 114903 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | | | | || || ||||| || ||||| || || ||| ||| |||||||| | Sbjct 114904 CAGCGCACC-TAC-CTCTTCAATGCTATCGAGACCATCCCCTGTATCCGAAAGAAGGCCG 114961 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | ||| | ||| |||||| | | | | | || ||| || | || | || | Sbjct 114962 ATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTGGTTGCCT 115021 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 |||| || ||||| ||||| ||||| ||| ||| || | || || ||| | |||| Sbjct 115022 TCGCTGCTGTCGAGGGTATTTTCTTCAGCGGCGCCTTCGCTTCCATCTTCTGGCTCAAGA 115081 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | ||||| || ||||| || ||||| || |||||| | || || || |||||||||| Sbjct 115082 AGCGCGGTCTTATGCCTGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTC 115141 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATC 58164 |||| || || ||||| ||||| | |||| ||| |||| ||| || | Sbjct 115142 TCCACACCGACTTTGCTTGCCTCCTCCACTCCCAC---CTCAA-GGGCCG-TGCCAGCAA 115196 Query 58165 GCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 ||| || | |||||| || || || || || ||||| | ||||| | ||||| Sbjct 115197 GCAGGTCATTCAGGACATCATTACTGATGCCGTGAACATCGAGCAGGAGTTCCTTACCGA 115256 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 || || || ||| ||||||| ||||| || | ||| ||||||||||||| Sbjct 115257 GGCTCTGCCTTGTGCCCTGCTCGGCATGAATGCCGACCTCATGAAGCAGTACATTGAGTT 115316 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAAT 58337 ||||| ||| |||| | ||| || | |||| ||| || || | || Sbjct 115317 CGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAGGTC--TATAAGTCTTCCAAC 115374 Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 115375 CCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAA 115430 >seq20 Length=1074596 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || ||||| | || ||||| | | Sbjct 146809 ATGCAAATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAGTCAAGC 146750 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||||||||| || | || || |||||| Sbjct 146749 GATACCATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 146690 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| ||| | ||| ||||||| |||||| Sbjct 146689 CAGCGCCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACTCTGAGCGACTATAAC 146630 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| |||||||| ||||| || Sbjct 146629 ATCCAGAAGGAATCTACTCTTCACCTGGTTCT 146598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765803787440