Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq30 165 1e-35 seq35 152 6e-32 >seq30 Length=762562 Score = 165 bits (182), Expect = 1e-35 Identities = 455/695 (65%), Gaps = 12/695 (2%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || |||| || ||||| | | ||| || |||| | || || || ||||| ||| Sbjct 622375 GGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATGAAG 622434 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| ||||| | || || || | | | | ||||| || || Sbjct 622435 AGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGG 622494 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| || || |||||| | | | ||| || ||||| || || | ||| || || Sbjct 622495 TTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATAGCG 622554 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||| || ||||| || ||||| || | |||| || ||||| || | ||| Sbjct 622555 AAGGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCGGGCAGTGTTGTTGAAGACT 622614 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| || | | ||||| || |||| |||||||||| ||| ||| || || Sbjct 622615 CGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCGGTG 622674 Query 63522 GCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||| || | | || | |||| || || || ||||| || || || | || | Sbjct 622675 GCACGGATGCGGTGCACGTTCA--GACCAATGCCACCAGCCATCTTGGAAATCATGGCAC 622732 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | || |||||||| || || ||||| || || |||||| || || || | Sbjct 622733 AGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGAAGC 622792 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| | ||| ||| || ||||| |||| || || || ||||| || | Sbjct 622793 ATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGGTGA 622852 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGA 63755 | | || || | || ||||| ||||||| | || ||||| || || Sbjct 622853 AGAACTTGCTCGACATGAGGTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCCAGA 622912 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || | |||||||| | |||||||||||| | || ||||| ||||| | Sbjct 622913 TG----CCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTGTTATCA 622968 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || || | | ||| ||| |||| ||| || || ||||| || | |||| ||||| Sbjct 622969 ATCTTGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAGTCA 623028 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || || | ||| | || | |||| ||||| Sbjct 623029 CGGTCATAGACAATGGCAGAGTCCAGCTCCTCCTT 623063 >seq35 Length=674057 Score = 152 bits (168), Expect = 6e-32 Identities = 371/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 115160 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 115101 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || ||||||||||| | ||| ||||| Sbjct 115100 CCAGGCATAAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAA 115041 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758 || || || || ||||| ||||||| || | || || | | | | ||| || Sbjct 115040 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 114981 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || |||||||||||||||||| | ||| || || || || || ||||| Sbjct 114980 ATCCATCGGATG-GCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATT 114922 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| | | | | || || | ||||| ||||| | || || | Sbjct 114921 GAAGAGGTAGGTGCGCTGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGT 114862 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || ||||| || || || || ||||| ||||| ||||| |||| ||||| | || Sbjct 114861 CTCAGAATGGATATTCTCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTCAGGGAT 114802 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || || || || || | | || || || || || |||||| || || Sbjct 114801 CTGGACCTCGCCACTGAACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 114742 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 ||| || || | | || | ||| | | ||||| | |||| | || ||||| Sbjct 114741 AAAGAAGGCAAGGATGTGAGAGACAAAGAACTGCTCGTCGGCAGTTAGGCGGTTGTTCCA 114682 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||||| | ||| ||||| | || | || || | ||||| || || ||||| ||||| Sbjct 114681 ATCATGAAGATCCTTAGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 114622 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 114621 CTTGTACATCTGCCAGAT 114604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816757618960