Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq30 168 9e-37 seq35 113 6e-20 >seq30 Length=762562 Score = 168 bits (186), Expect = 9e-37 Identities = 445/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || ||||| || ||||| | | ||| || || | | | || || ||||| Sbjct 622372 CCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATG 622431 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| ||||| | || || || | | | | |||||| || || Sbjct 622432 AAGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCG 622491 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||| || ||||| || || | ||| || Sbjct 622492 TGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATA 622551 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | |||| || ||||| || | Sbjct 622552 GCGAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCGGGCAGTGTTGTTGAAG 622611 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| | ||| || | | || ||||| | ||| ||||| |||| ||| ||| || Sbjct 622612 ACTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCG 622671 Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || ||| || | |||| || || || ||||| || || || | | Sbjct 622672 GTGGCACGGATGCGGTGCACGTTCA--GACCAATGCCACCAGCCATCTTGGAAATCATGG 622729 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | ||||||||||| ||||| || || || ||| |||||| || || | Sbjct 622730 CACAGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGA 622789 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || ||||| ||| | || ||| || ||||| |||| || || || ||||| | Sbjct 622790 AGCATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGG 622849 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCAT 72507 | || | || |||| || ||||| ||||||| | || ||||| || Sbjct 622850 TGAAGAACTTGCTCGACATGAGGTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCC 622909 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 |||| || || | |||||||| | ||| |||||||| | || || ||||||||| Sbjct 622910 AGATG----CCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTGTTA 622965 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | || || | | ||| ||| |||| ||| || || ||||| || | |||| ||| Sbjct 622966 TCAATCTTGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAG 623025 Query 72628 TCTCGTTCGTAAATAAT 72644 || || || || | ||| Sbjct 623026 TCACGGTCATAGACAAT 623042 >seq35 Length=674057 Score = 113 bits (124), Expect = 6e-20 Identities = 362/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | | || | ||||| || || || || Sbjct 115160 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 115101 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || ||||| || || || || || | || ||||| Sbjct 115100 CCAGGCATAAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAA 115041 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 || || || || || || ||||||| || | || || | | | |||| || Sbjct 115040 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 114981 Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | || |||||||||||||||||| | ||| || || || || || ||||| Sbjct 114980 ATCCATCGGATG-GCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATT 114922 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| ||| | | | | || || | || || ||||| | || || | Sbjct 114921 GAAGAGGTAGGTGCGCTGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGT 114862 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || ||||| || || || || ||||| ||||| ||||| |||| |||||| | | Sbjct 114861 CTCAGAATGGATATTCTCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTCAGGGAT 114802 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| || || || || || ||| | | || ||||| || || || ||| || || Sbjct 114801 CTGGACCTCGCCACTGAACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 114742 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCA 42537 ||| || || | | || | ||| | | ||||| | |||| || ||||| Sbjct 114741 AAAGAAGGCAAGGATGTGAGAGACAAAGAACTGCTCGTCGGCAGTTAGGCGGTTGTTCCA 114682 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 ||||| | ||| ||||| | || | || || | ||||| || || || || ||||| Sbjct 114681 ATCATGAAGATCCTTAGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 114622 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 114621 CTTGTACATCTGCCAGAT 114604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138302351320