Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq35 214 3e-50 seq30 154 2e-32 >seq35 Length=674057 Score = 214 bits (236), Expect = 3e-50 Identities = 563/848 (66%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||||||||| ||||| | ||| ||| | || ||| Sbjct 114604 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACCTG 114663 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTT---TAT 125134 || ||||| || | |||||| | | || | |||| | || |||| |||| | | Sbjct 114664 TCTAAGGATCTTCATGATTGGAACAACCGCCTAACTG---CCGA-CGAGCAGTTCTTTGT 114719 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | ||||||||||| | || ||||| || |||||||| || || ||||| Sbjct 114720 CTCTCACATCCTTGCCTTCTTTGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTTGA 114779 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 || ||| | ||| | || || |||| ||||| || |||||||| |||| Sbjct 114780 G-CGGTTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGATCA 114838 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| ||||| | || || || | ||||| || || |||| ||||| || | Sbjct 114839 TGATGGAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACATCAAGGAGC 114898 Query 125314 CG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | || || | || ||||| || || ||||| || | || | ||| || || | Sbjct 114899 CTTCTCAGCGCACCTAC---CTCTTCAATGCTATCGAGACCATCCCCTGTATCCGAAAGA 114955 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || || |||||| | ||| | || ||||| | ||| | | |||| Sbjct 114956 AGGCCGATTGGGCCATCCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTGG 115015 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || ||||| || || ||||| || ||||| || || || ||||||| |||| Sbjct 115016 TTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGCGGCGCCTTCGCTTCCATCTTCTGGC 115075 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| || ||||| || ||||| | ||||||| | || ||||| |||| Sbjct 115076 TCAAGAAGCGCGGTCTTATGCCTGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACG 115135 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| |||||||| || || | ||| | | | || || Sbjct 115136 AGGGTCTCCACACCGACTTTGCTTGCCTCCT------CCACT---CCCACCTCAAGGGCC 115186 Query 125611 GATCCAGCGATGAAAAGGTCA-TCA--ACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | |||||| ||| |||| | || |||||||||| || || || | Sbjct 115187 GTGCCAGC---AAGCAGGTCATTCAGGACATCATTACTGATGCCGTGAACATCGAGCAGG 115243 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || ||||| | || || | || | |||||||| | | || ||| Sbjct 115244 AGTTCCTTACCGAGGCTCTGCCTTGTGCCCTGCTCGGCATGAATGCCGACCTCATGAAGC 115303 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACA 125787 ||||||| ||||| || || || || ||||| || | | | ||| | || | Sbjct 115304 AGTACATTGAGTTCGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAGGTCTATA 115363 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | | || ||||| || |||||| | ||| || || | || ||||||||||| | Sbjct 115364 AGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCT 115423 Query 125848 TCGAGAAG 125855 |||||||| Sbjct 115424 TCGAGAAG 115431 >seq30 Length=762562 Score = 154 bits (170), Expect = 2e-32 Identities = 345/510 (68%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||| ||| ||||| ||||| || || || || || | || ||||| | || || Sbjct 622595 CGATATGTTGACCAGGGTGGCAACAAGCGACCTGGTGCCTTCGCTATCTACCTTGAGCCC 622536 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||| |||| || ||||| || | || ||||||| ||| ||| || |||| Sbjct 622535 TGGCACTCGGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTT 622476 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| |||| ||| |||||| | || ||| | ||||||||||| || | Sbjct 622475 CGCGCTCGCGACCTGTTCCTTGCTCTCTGGATCCCCGATCTCTTCATGAAGCGTGTTGAG 622416 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| ||| |||||||| | || |||||||| |||| |||| Sbjct 622415 AAGAACGGCGACTGGACCCTCATGTGCCCTAATGAGTGCCCCGGTCTTGCCGACTGCTAC 622356 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162 ||||| ||||||||||| ||| | |||||||| | ||| | || |||| Sbjct 622355 GGCGATGAGTTTGAGGCTCTGTATGAGAAGTACGAGCAGGCTGGCAAGGGTCGCAAGACC 622296 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | || | || | |||| || ||| | || | || ||| ||||||| |||||||| | Sbjct 622295 A-TCAAGGCTC-AGAAGCTCTGGTATGCTATTCTTGA-GGCTCAGACCGAGACTGGCAAC 622239 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| ||||||||||| | || ||||| || ||||| || |||| ||| Sbjct 622238 CCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACC 622179 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 || ||||||| ||||||| || ||| | |||||| | || || ||| || Sbjct 622178 ATTCGAAGCTCCAACTTGTGCACTGAGATTATTGAGTACTGTGCCCCTGATGAGGTTGCT 622119 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCC 97370 || ||| |||||||| || ||||||| Sbjct 622118 GTGTGCAACCTGGCATCCCTCGCTCTGCCC 622089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058208833320