Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq35 104 5e-17 seq20 104 5e-17 >seq35 Length=674057 Score = 104 bits (114), Expect = 5e-17 Identities = 200/290 (69%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| ||||||||| |||||| || || || ||||| | || || | || ||| Sbjct 114604 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACCTG 114663 Query 268793 TCTTATGA-CTTAATAGATTGGAAAAATT---TAAAACCAGAAGAAAGAAGAT--TTATA 268846 ||| | || ||| || |||||||| || ||| | || || | || | || | Sbjct 114664 TCTAAGGATCTTCAT-GATTGGAACAACCGCCTAACTGCCGACGA--GCAGTTCTTTGTC 114720 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 ||| | || ||||| || ||||| | | |||||| || || ||||| || || || ||| Sbjct 114721 TCTCACATCCTTGCCTTCTTTGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTTGAG 114780 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 |||| || ||||| ||||| ||||| ||| |||| || || ||||||||||| Sbjct 114781 CGGTTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGATCATG 114840 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || ||||| ||||| |||| ||| || | || || ||||| || Sbjct 114841 ATGGAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACAT 114890 >seq20 Length=1074596 Score = 104 bits (114), Expect = 5e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | || |||| || || || ||||| || ||| Sbjct 147069 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCGAGTTGCTTGCCA 147128 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| ||||| || || || || || ||||||||||| | || Sbjct 147129 GCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 147188 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| | || ||||| || ||||| ||||| ||||| || || Sbjct 147189 ACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTC 147248 Query 104543 TTTACAA 104549 || |||| Sbjct 147249 TTGACAA 147255 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| || |||||||| || || | |||||| ||||| || || || || || |||||||| Sbjct 147467 TTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAAT 147526 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 ||| | || ||||| || | || ||| | || ||||| || ||||| ||||| || Sbjct 147527 CTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCC 147586 Query 104533 AGTAAGTGTTTTTACAA 104549 ||| || || || |||| Sbjct 147587 AGTGAGGGTCTTGACAA 147603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396821504756