Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq20 91.5 1e-13 >seq2 Length=1405217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || |||||||| || || | || || | ||||| ||||| Sbjct 409119 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCGAGCTG 409177 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | |||||||||||| || | | ||||||||| || || Sbjct 409178 CTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 409237 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| ||||||| ||| | || || || || || Sbjct 409238 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCC 409295 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 |||||||| || || |||||||||||| || || Sbjct 409296 GTGAGAGTCTTGACGAAAATCTGCATCTTGCCT 409328 >seq20 Length=1074596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTG-TCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| || || | | ||| ||||||| ||||| || ||| || | Sbjct 146847 TCCTTCTGAATGTTGTAGTC-GCTGAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAA 146905 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | ||||||||| || ||| ||| | | Sbjct 146906 GATAAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATT 146965 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 146966 GTCAATAGTATCGGATGACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGAC 147025 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 147026 AAAGATCTGCAT 147037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250650662107