Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 >seq20 Length=1074596 Score = 127 bits (140), Expect = 2e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | || ||||| |||| ||||| |||||||||||| || | | Sbjct 146799 AAAATTTGCATACCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATG 146858 Query 94829 TTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||||| | ||| || | ||||| |||||||||||| | ||||| | || | Sbjct 146859 TTGTAGTCGCTGAGAGTTCGTCCG--TCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCT 146916 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||| || ||||| || || ||||| | || || | ||| || | | | ||| | Sbjct 146917 GCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTAT 146976 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | |||||||| ||||| || ||||| || ||||||||||||| Sbjct 146977 CGGATGACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCA 147036 Query 95007 T 95007 | Sbjct 147037 T 147037 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | |||||||||||| || | |||||| ||||||| |||| |||||| Sbjct 146601 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTCC 146660 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | | ||||| || ||||||||||| || ||||| | Sbjct 146661 AGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 146720 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTT 94977 || || | ||| ||| | ||| || || || || || || |||| |||||||| || Sbjct 146721 ATCTTGGACTTCACGTTGTCGATGGTATC-GCTTGACTCAACCTCAAGAGTGATGGTCTT 146779 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | || || || || || ||||| Sbjct 146780 TCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290600410520