Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 2e-15 seq35 91.5 2e-14 >seq40 Length=547254 Score = 95.1 bits (104), Expect = 2e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || || |||| ||| | |||| |||||| ||||||| || || |||| || ||| || Sbjct 17517 TACGAGGAGACTCGCGGTGTTCTGAAGACCTTCCTCGAGGGTGTCATCCGCGACGCTGTC 17458 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| ||||||||||| || || ||||| ||||| || | || ||||||| || | Sbjct 17457 ACCTACACCGAGCACGCCAAGCGAAAGACCGTCACTTCGCTCGACGTCGTCTACGCGCTC 17398 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || || |||||||||| | || ||||| || ||||| || Sbjct 17397 AAGCGACAAGGCCGTACCCTGTACGGTTTCGGTGGTTAAGCT 17356 Score = 95.1 bits (104), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| ||| || || ||||| || || ||||||||||| || || Sbjct 17677 GCCAAGCGCCACCGCAAGAT-TCTACGTGACAACATTCAGGGTATCACCAAGCCCGCCAT 17619 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||| ||||| |||||||| ||||||||| |||||| Sbjct 17618 TCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTG 17578 >seq35 Length=674057 Score = 91.5 bits (100), Expect = 2e-14 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || || |||||||| ||||| Sbjct 539120 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 539062 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||| ||||| ||||||||||| || ||||||||| Sbjct 539061 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGT 539028 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | |||| ||||||| || || |||| ||||| Sbjct 538958 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATG 538899 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| || ||||| | || | ||||| | Sbjct 538898 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTTACCTCGCTTGACGTTGTCTACG 538839 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 538838 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 538795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075102169151