Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq30 170 2e-37 seq35 143 3e-29 >seq30 Length=762562 Score = 170 bits (188), Expect = 2e-37 Identities = 458/698 (66%), Gaps = 12/698 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || || |||| || ||||| | | ||| || |||| | || || || ||||| Sbjct 622372 CCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATG 622431 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| || ||||| ||||| | || || || | | | | ||||| || || Sbjct 622432 AAGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCG 622491 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||| || ||||| || || | ||| || Sbjct 622492 TGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATA 622551 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || ||||| || | |||| || ||||| || | Sbjct 622552 GCGAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATATCGGGCAGTGTTGTTGAAG 622611 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| | ||| || | | ||||| || |||| |||||||||| ||| ||| || Sbjct 622612 ACTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCG 622671 Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||||||| || | | || | |||| || || || ||||| || || || | | Sbjct 622672 GTGGCACGGATGCGGTGCACGTTCA--GACCAATGCCACCAGCCATCTTGGAAATCATGG 622729 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | || || | || |||||||||||||| ||||| || || |||||| || || | Sbjct 622730 CACAGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGA 622789 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || ||||| ||| | || ||| || ||||| |||| || || || ||||| | Sbjct 622790 AGCATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGG 622849 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCAT 63701 | || | || || | || ||||| ||||||| | || ||||| || Sbjct 622850 TGAAGAACTTGCTCGACATGAGGTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCC 622909 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 |||| || || | |||||||| | |||||||||||| | || || |||||||| Sbjct 622910 AGATG----CCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTGTTA 622965 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 | || || | | ||| ||| |||| ||| || || ||||| || | |||| ||| Sbjct 622966 TCAATCTTGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTATTGGAAG 623025 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 || || || || | ||| | |||| || | ||||| Sbjct 623026 TCACGGTCATAGACAATGGCAGAGTCCAGCTCCTCCTT 623063 >seq35 Length=674057 Score = 143 bits (158), Expect = 3e-29 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | | || || ||||| || || || || Sbjct 115160 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 115101 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||||||||| | || ||||| Sbjct 115100 CCAGGCATAAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAA 115041 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || || || || ||||| ||||||| || | || || | | | | ||| || Sbjct 115040 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 114981 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || |||||||||||||||||| | ||| || || || || || ||||| Sbjct 114980 ATCCATCGGATG-GCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATT 114922 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| ||| | | | | || || | ||||| ||||| | || || | Sbjct 114921 GAAGAGGTAGGTGCGCTGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGT 114862 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || ||||| || || || || ||||| ||||| ||||| |||| ||||| | || Sbjct 114861 CTCAGAATGGATATTCTCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTCAGGGAT 114802 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || || || || || | | || || || || || || ||| || || Sbjct 114801 CTGGACCTCGCCACTGAACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 114742 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33776 ||| || || | | || | ||| | | ||||| | |||| | || ||||| Sbjct 114741 AAAGAAGGCAAGGATGTGAGAGACAAAGAACTGCTCGTCGGCAGTTAGGCGGTTGTTCCA 114682 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||||| | ||| ||||| | || | || || | ||||| || || ||||| ||||| Sbjct 114681 ATCATGAAGATCCTTAGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 114622 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 114621 CTTGTACATCTGCCAGAT 114604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946366808120