Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20 107 2e-18 seq2 82.4 7e-11 >seq20 Length=1074596 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060 |||| || || | ||||| || | |||||| |||| |||||| || |||||| |||| Sbjct 147255 TTGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCG 147196 Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120 | | ||||| |||||| ||||| || ||||| || || || |||||| | |||| Sbjct 147195 ACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGA 147136 Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180 | | | |||||||||||||| |||| | ||| | || |||||| ||||| || || | Sbjct 147135 TCTTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGG 147076 Query 24181 AATCTAC 24187 | || || Sbjct 147075 AGTCCAC 147069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 |||||| |||| |||||| || ||||||||||| | ||||| |||||| ||| Sbjct 147860 ATTACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCCAAGATTCAGGAC 147801 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || ||||| || || || || ||| || |||||| || ||||||||| || || ||| Sbjct 147800 AAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGAT 147741 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | || |||||| ||||| || || || || || Sbjct 147740 GGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCAC 147700 >seq2 Length=1405217 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || |||| ||| | || || ||| | Sbjct 409325 CAAGATGCAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 409266 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 409265 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 409206 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| |||| || | | |||||||| ||||| |||| | | | | | ||||| || Sbjct 409205 TCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 409146 Query 24167 TAACATTCAAAAAGA 24181 ||||| || || || Sbjct 409145 CAACATCCAGAAGGA 409131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935439336585