Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35 161 1e-34 >seq35 Length=674057 Score = 161 bits (178), Expect = 1e-34 Identities = 379/564 (67%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| || ||| || | Sbjct 115161 GCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAG 115102 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || ||||| || || || || Sbjct 115101 ACCAGGCATAAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAA 115042 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268 ||||| || || || || || || || | ||| | |||||| | || || || Sbjct 115041 AATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAA---GGAAGAGTTCTTGTC 114985 Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||||| | ||||||||||| || || ||||| || | || |||||||| Sbjct 114984 CTGGATCCATCGGATGGCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGC 114925 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAA-TCTCGT--ATGTATGTATCGATTAACAGAGA 93384 || || ||||| ||| | ||| ||| | ||||| || ||||| | ||| || Sbjct 114924 ATTGAAGAGGTAGGTGCGC---TGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGA 114868 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 || | |||||||||| ||||||||| || |||||||| ||||| |||| || || Sbjct 114867 GTAGGTCTCAGAATGGATATTCTCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTC 114808 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | |||||| || || | || | ||| ||||| || || ||||| || ||||| || Sbjct 114807 AGGGATCTGGACCTCGCCACTGAACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGA 114748 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGC--TT 93561 || ||||| || || | || || | ||| | ||| || | ||| || || Sbjct 114747 AGCAGCAAAGAAGGCAAGGATGTGAGAGACAAAGAACTGCTCGTCGGCAGTTAGGCGGTT 114688 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 | |||||| ||||| || || || || | || ||| | ||||| || || || || Sbjct 114687 GTTCCAATCATGAAGATCCTTAGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAGGCCTC 114628 Query 93622 TGCTTTTTTGTACATATCCCATAT 93645 || || |||||||| | ||| || Sbjct 114627 GGCCTTCTTGTACATCTGCCAGAT 114604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860055198680