Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq20 109 5e-19 seq32 100 2e-16 >seq2 Length=1405217 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || ||| | || || || ||| |||| ||||| ||||| | Sbjct 409324 AAGATGCAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 409265 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || ||| Sbjct 409264 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAT 409205 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 409204 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 409145 Query 22396 AACATTCAAAAAGA 22409 ||||| || || || Sbjct 409144 AACATCCAGAAGGA 409131 >seq20 Length=1074596 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || || | || Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || || ||||||||||| ||||| || ||||| Sbjct 146977 GATACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 146918 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| |||||| | ||||| || || || ||| |||||| Sbjct 146917 CAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGACGAACTCTCAGCGACTACAAC 146858 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || | || ||||| |||| || ||| Sbjct 146857 ATTCAGAAGGAATCTACTCTGCACCTGGTCCTGCGACTGCGTGGTGGT 146810 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || ||||| || || |||||||||| || || | | | Sbjct 146809 ATGCAAATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAGTCAAGC 146750 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || ||||||||||||||||| || || || Sbjct 146749 GATACCATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 146690 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | ||||| ||||| | ||| || ||| Sbjct 146689 CAGCGCCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACTCTGAGCGACTATAAC 146630 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 146629 ATCCAGAAGGAATCTAC 146613 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 |||| || || | || || || || | || || || || || || |||| || | | Sbjct 147255 TTGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCG 147196 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || || |||| || ||||| ||||||||||| || || || || ||||| ||||| | Sbjct 147195 ACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGA 147136 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | ||||| ||||| || | |||||| ||| ||| || ||||||||||||| || || | Sbjct 147135 TCTTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGG 147076 Query 22409 AATCCAC 22415 | ||||| Sbjct 147075 AGTCCAC 147069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || || || || || || | || || |||||||| Sbjct 147464 AAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAG 147405 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| || ||||||||||||| || || || ||||| Sbjct 147404 CAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCAC 147352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || || || || || || | || || |||||||| Sbjct 147812 AAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAG 147753 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| || ||||||||||||| || || || ||||| Sbjct 147752 CAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCAC 147700 >seq32 Length=2292469 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| ||||| || || || |||| || | Sbjct 450104 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACTAT 450045 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||| ||||| || ||||| || || || Sbjct 450044 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 449985 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||| ||| ||||||| |||||||| || || Sbjct 449984 CATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 449925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727452648455