Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 118 2e-21 seq35 105 1e-17 seq23 91.5 3e-13 >seq28 Length=801081 Score = 118 bits (130), Expect = 2e-21 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| ||||| ||||| || ||||||||||| ||||| || || Sbjct 420124 TCCCGTATTGCCGTCATTGGTCCCAACGGTGCCGGCAAGTCTACCCTGATCAACGTTCTC 420183 Query 280221 ACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATG 280277 ||||| ||| | || |||| ||||| | | |||| ||||| || || Sbjct 420184 ACTGGTGAGCTTATCC---CCACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATC 420240 Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337 || ||| || |||||||||||| |||||| || ||||||||||||| ||||||| | Sbjct 420241 GCCTACATCAAGCAGCACGCTTTCGCCCACATTGATAACCACCTGGACAAGACTCCTTCC 420300 Query 280338 CAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 420301 GAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 420353 Score = 114 bits (126), Expect = 3e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| | ||| || ||||||||||||| || ||||| ||||| | Sbjct 420680 CCAACTTCGGTCTCGACGCTGAGCTTGTCTCTCACTCTCGCATGCGTGGTCTGTCTGGTG 420739 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| | | || |||| |||||| | |||||| | ||||| Sbjct 420740 GCCAGCGTGTCAAGACTGTCCTGGCCGCCTGCTC-GTGGCAGCGACCTCACCTTATCGTC 420798 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||||||||||||||||||||| || |||||| ||||| Sbjct 420799 CTGGACGAGCCTACCAACTATCTGGACCGTGACTCCCTGGGTGCTCT 420845 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| ||||| ||||||| |||||||| || ||| Sbjct 419308 GGTGAGGATCTTTGCAACTGTACCTTCTCCCTCGCCTATGGTGCCAAGATTCTTCTCAAC 419367 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || |||||| |||||||| || | Sbjct 419368 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGTCTCTGTGGTCCCAACGGTTCC 419427 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 419428 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 419486 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 419487 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTC 419528 >seq35 Length=674057 Score = 105 bits (116), Expect = 1e-17 Identities = 378/585 (65%), Gaps = 17/585 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 115427 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAA 115368 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || || ||| | ||||| || |||| | ||||| || || ||||| | Sbjct 115367 GACTTATAGACCTTCTCGTTACCAAGAGCGACGAGTAGTCGGTCAGCAACGAACTCAATG 115308 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | |||||||| | || |||||| | ||||| | | Sbjct 115307 TACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGGCACAAGGCAGAGCCTCGGTAAGG 115248 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| || || || || | || ||| | ||||| | | | | Sbjct 115247 AACTCCTGCTCGATGTTCACGGCATCAGTAATGATGTCCTGAATGACCTGCTTGCTGGCA 115188 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| |||| | ||| ||||||||||| Sbjct 115187 CGGCC----CTTGAGGTGGGAGTGGAGGAGGCAAGCAAAGTCGGTGTGGAGACCCTCGTC 115132 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| |||||| || | | ||| |||||||| | || || ||| ||||||| Sbjct 115131 ACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCAGGCATAAGACCGCGCTTCTTGAGCCA 115072 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | |||| || ||| | | |||||||||| | | ||||| || Sbjct 115071 GAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAG 115012 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| ||||| || ||||||||| || | | || ||||| | ||||| Sbjct 115011 ACGCTGGGCAAAGGAAGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAATCGGCCTT 114955 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | |||||| || ||||| |||| ||||| || | |||| | | || Sbjct 114954 CTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAGGTAGGTGCGCTGAGAAGGCTC 114895 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 || |||| | || | || || ||||| |||| |||||||| Sbjct 114894 CTTGATGTAAGTGTCGATAAGCAGCGAGTAGGTCTCAGAATGGAT 114850 >seq23 Length=959658 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| |||||||||||||||||| ||||| | | || ||||| || | Sbjct 871085 GTCGGCTCTCTGTCTGGTGGTTGGAAGATGAAGTTGGCCTTGGCGCGAGCCATGCTTCAA 871026 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCA 279793 |||||||||||||| || || || || || |||||||| Sbjct 871025 CGTGCCGATGTCCTCCTCCTGGACGAACCTACCAACCA 870988 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 || || ||||| || || || ||||| || || ||||| | || || |||||||| Sbjct 870602 ATCGGCCCCAACGGAGCTGGCAAGTCGACGCTCATCAAGCTGCTTACCGGCGAGACTATT 870543 Query 280236 GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 |||| || || ||||||||||||| |||| || | ||| | |||||| Sbjct 870542 CCCACCACCGGAAAGGTCGAGAAGCATCCCAACCTGCGTATCGGCTACATTAAGCAGCAC 870483 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || | | ||| |||||| |||||||| | |||||||||||| ||| | |||||||| Sbjct 870482 GCCCTGGAGCACGTCGAGATGCACCTGGAGAAGACTCCTAACCAGTACCTGCAGTGGCGT 870423 Query 280356 TA 280357 || Sbjct 870422 TA 870421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835390899987